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...tttctcaagaaacatgtgctaccatttatttatttattttttttcagaatttatgtaatatttttactgtggagaatactcatttttctgtcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGAAGTTCTGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAA
species | Vitis vinifera |
transcript | Vv17s0000g01200.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACA GTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGEST: gi|71885134|gb|DT034189.1|DT034189
genomic: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAgtaagtcaag ... tcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAG
EST: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACA GTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGEST: gi|71858444|gb|DT007499.1|DT007499
genomic: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAgtaagtcaag ... tcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAG
EST: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACA GTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGEST: gi|71889831|gb|DT038886.1|DT038886
genomic: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAgtaagtcaag ... tcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAG
EST: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACA GTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAG
genomic: TAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAgtaagtcaag ... tcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAG
agaatttatgtaatatttttactgtggagaatactcatttttctgtcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGAAGTTCTGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAA
ctcatttttctgtctt CT-rich tract
ttatgtaatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctcaagaaacatgtgctaccatttatttatttattttttttcagaatttatgtaatatttttactgtggagaatactcatttttctgtcttaaccagGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGAAGTTCTGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - gaaacat
- - - - - - - - -gctacca