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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaatttgtttctttcattgtatttttgactcatccaacttaatatgctagtgtttctgaggccattctccatttgttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTGTTTCCCTTTTGAACAGCCTCAAGGCATGAAAACATGCCTGATGACAGGC

Basic information

species Vitis vinifera
transcript Vv16s0050g00960.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30330458|gb|CD013720.1|CD013720
EST:     AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG                         TGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
genomic: AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGgtattaaatt ... gttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
EST: gi|110371250|gb|EC935115.1|EC935115
EST:     AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG                         TGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
genomic: AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGgtattaaatt ... gttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
EST: gi|351023829|gb|FQ448380.1|FQ448380
EST:     AAAGAGGCCATTTCTCANGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG                         TGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
genomic: AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGgtattaaatt ... gttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
EST: gi|30132227|gb|CB917566.1|CB917566
EST:     AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG                         TGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
genomic: AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGgtattaaatt ... gttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
EST: gi|351033120|gb|FQ446473.1|FQ446473
EST:     AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG                         TGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG
genomic: AAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGgtattaaatt ... gttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatccaacttaatatgctagtgtttctgaggccattctccatttgttggtatagTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTGTTTCCCTTTTGAACAGCCTCAAGGCATGAAAACATGCCTGATGACAGGC
       acttaat  putative branch site (score: 4)
      aacttaatat  TA-rich tract