Sequence
atgc intronic sequence ATGC exonic sequence...caattaagtagaaggaaaccattaagtaatatttatgaagtttaaaaattttaaagtatccattttggtccatttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G37890.1 (Glycine max), 3'ss of exon 10
------------------------------------------------------------------caattaagtagaaggaaac-cattaagtaatatttatgaagttta-----------aaaattttaaagtatccattttggtcca-------tttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
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gttcctatttcaacttttttctcagcagtttatggaatagctttcacccattctgtctcttaagaagtctttagtgtttgcaaacatgttagattttgtgaatgaagtctgttgtttactccacacttgttcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA
upper sequence: Vv16s0050g00570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G29930.2 (Glycine max), 3'ss of exon 10
--------------------------------------------------------------------------caattaagtagaaggaaaccattaagtaatatttatgaagtt--taaaaattttaaagtatccattttggtcca-------tttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
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gttcctatttcaagttttttggcagcagtttatggaatagctttcacccattctatctcagaagaagtctttagtgtttacaaacatgttagattttgagaatgaaatctgtagttagtacacgtgttcaaa-actcatcatgatgtaaataagactcattttccttaatccactttattcagGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGA
upper sequence: Vv16s0050g00570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G23870.2 (Arabidopsis thaliana), 3'ss of exon 10
caattaagtagaaggaaaccattaagtaatatttatgaagtttaaaaattttaaagtatccattttggtccatttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
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----------gttcaaaaccaaaaaatgatttagttcaaatgggaaaaccggtaaaaaccatctataaactgaaccgaaactccggttttgtttttgcagGGTTTAGGAAAGATATGTTGGGAGCTTTAATGAATTTCTTCAGAAATTCTACGAGAGGAGGAATGTTTATAAACTCATGCTTTGATCATTGTCAAAGTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaattttaaagtatccattttggtccatttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
ttttcgtt CT-rich tract
atttattactttcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caattaagtagaaggaaaccattaagtaatatttatgaagtttaaaaattttaaagtatccattttggtccatttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -aagtagaa
- - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - taaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattta