Sequence
atgc intronic sequence ATGC exonic sequencegtatgagttccaaaacttgatatttgattattggcatgatgatttacaaattcttttcttcattaatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 10
gtatgagttccaaaacttgatatttgattattggcatgatgatttacaaattcttttcttcattaatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
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--gtatgttcttaaact-gccattttatt-tgggccag-----ttata---tctttcctttgtta---tttactgttctct-----aagttatgg--atgatttatatc------tagGCAGTAAACAAGCATCGTCTGATATTTGTGAGTAGTGCCGGTAATAGTGGGCCAGCATTGAGCACTGTTGGTGCACCTGGTGGTACATCTACAAATATTA
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G30190.2 (Glycine max), 3'ss of exon 10
gtatgagttccaaaacttgatatttgattattggcatgatgatttacaaattcttttcttcattaatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
||||| ||| | | | || | | || ||||| |||| ||| || || | | |||||| | ||| || | |||| |||||| || |||| ||||||| || || ||||||||||| || || |||| |||||||||||| || ||||||||||||| |||| || || |
-------------------gtattttctta--gactttcattttagcggagcacttatatcatttatttgccat--tctctattcttagttgttattttg--gttggtttacttctagGTGGTGAACAAACATCGCCTGATATTTGTGAGCAGTGCTGGTAATAGCGGGCCAGGATTGAGCACTGTTGGTGCACCTGGTGGTACATCTTCCAGTATCA
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 10
gtatgagttccaaaacttgatatttgattattggcatgatgatttacaaattcttttcttcattaatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
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-------------------gtattttctta--gactttcattttagctgagcactgatatcatttattatctat--tctcttagtt--gttgttttggttg-gtttactta----tagGTGGTGAACAAGTATCGTCTGATATTTATTAGCAGTGCTGGTAATAGCGGGCCAGGATTGAGCACTGTTGGTGCACCTGGTGGTACATCTTCAAGTATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
cattaat putative branch site (score: 3)
aatgtttattaaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgagttccaaaacttgatatttgattattggcatgatgatttacaaattcttttcttcattaatttttcatgctccctctattaagttgtggtgacaatgtttattaaacattagGCGGTGAATAAGCATCATTTGATATTCGTCAGTAGTGCTGGTAACAGTGGCCCAGCATTGAGCACTGTGGGCTCACCTGGTGGTACCACTTCAAGCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG