Sequence
atgc intronic sequence ATGC exonic sequence...ttttcttcctataggaatgattaaatcttgaagtattggacatggttgaaagttatattccatgattcagggttatttcatgtttcattttacttttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 10
-ttttcttcctataggaatgattaaatcttgaagtattggacatggttgaaagttatattccatgattcagggttatttcatgtttcattttacttttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
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agggctatcccaactcaagggtcatggctagttataacatttaaggttctatgaga-atcccacagtctctaaatttactgtattttttttattatgtcagGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTCGTTGATAAACTCGGTGCTAGTCTG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 10
ttttcttcctataggaatgattaaatcttgaagtattggacatggttgaaagttatattccatgattcagggttatttcatgtttcattttact-tttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
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gggctatctcaactcaagggtcatggctggttataatgtttaaggttctatgaga-atcccacaatctttaaatttattgcatttttttttattgttttagGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 10
------------------------------------------------------------ttttcttcctataggaa-----tgattaaatcttgaagtattggacatggttgaaagtta---tattccatgattcagggttatttcatgt--ttcattttactt---ttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
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gtatgttcttacatctagagccaaataggctagaagcttttgtcttttttggggttttgatggtcctattatttgcgccttctgtctggttgcagagtcgctcaacatgctaagaaccgaaactagcctatgatttgatgatattttttgttgttcattttccttgcctttagGTTCATGTTTGATGCCATGCATGCTGTTACTGGTGCTTATGCGAAACCAATTTTTGTCGACAATCTTGGAGCCAAACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaagttatattccatgattcagggttatttcatgtttcattttacttttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
tttcattttacttttc CT-rich tract
tttcattttactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcttcctataggaatgattaaatcttgaagtattggacatggttgaaagttatattccatgattcagggttatttcatgtttcattttacttttcagGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- ttcttcc
- - - - - ataggaa
- - - - - - - - - - - - - - - - - - -ggacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg