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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttctgaacatttctgatacttcactattttcttctcttggttgccgcaaatatgtcatgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 7
gtactttttctgaacatttctg-----atacttcactattttcttctcttggttgccgcaaatatgt---catgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG
|||  |||||  | ||||||       ||||| ||    ||  ||    |||||      | | | |   ||||  | |  |  ||    ||  ||||||| ||||||| |||||  |||| || ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| |||
gtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 11
gtactttttctgaacatttctgatacttcactattttctt--ctcttggttgccgcaaatatgt------catgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG
|||   |||   | ||||||  | |    ||| | | | |   | |  || |     ||||  |      ||||  | |  |  ||     |  ||||||| ||||||| |||||  | || || ||||||| |||||||||||| |||| ||||||||| |||||||| |||||||| |||
gtatgcttttacaccatttcccaaaacatactgtatacattgttatcagtggtttttaatagattctaagcatgggttcattatttatttctaccttttaccagGTGGTGAAGTTTTTAGTGGAGCGGAATAGTAATAATGCTCTCCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G51710.2 (Arabidopsis thaliana), 3'ss of exon 10
-----------gtactttttctgaacatttctgatacttca-ctattttcttctcttggttgccgcaaatatgtcatgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG
            |  ||| |||   ||  | | ||||   | ||| | ||||  |  |||| |  |  | |  |  |||||    | |   ||  |   ||| || |||||||||||||  ||||||||||||| | ||  | | |||||||||||||||||||||| |||| |||||| || |||
gtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttcc--ggtttcatctcagagtttctgtttctaatcca--catgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggttgccgcaaatatgtcatgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG
                               cttcttccaattttct  CT-rich tract
                                       aattttcttttacta  TA-rich tract