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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagatgtttagctgaaggggtaacattgaaaaatatcctgctgagttaagtctgatgatatgtgctacttggatatatataggactgagttcttgaaagttcatattcttcttcatttgtttaacctagtacgatgatatgtaatagttgaacatatataaaatggtgatttatattttggttttccagATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAACTTCAGCAACACCAAACCAACAAG

Basic information

species Vitis vinifera
transcript Vv16s0013g00490.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133921|gb|CB919260.1|CB919260
EST:     CAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAG                         ATTGACGATTGTGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAA
genomic: CAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAGgtatggagat ... ggttttccagATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAA
EST: gi|30131322|gb|CB916661.1|CB916661
EST:     CAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAG                         ATTGACGATTGTGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAA
genomic: CAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAGgtatggagat ... ggttttccagATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgtaatagttgaacatatataaaatggtgatttatattttggttttccagATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAACTTCAGCAACACCAAACCAACAAG
                                               ttttcc  CT-rich tract
                aacatatataaaatgg  TA-rich tract