Sequence
atgc intronic sequence ATGC exonic sequencegtcaagctatctgtatcataatcttaaaacacatgaaagtacttgtatgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0013g00300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 3'ss of exon 13
gtcaagctatctgtatcataatcttaaaacacatgaaagtacttgtatgaacacacataaactattggtatggtgcatgctgaagctttcatgc-cacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
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----------------------gttgagaaatcttccacttattgc-tgaac-catat---tttttggttgtgtttatggtctaagttacctgtacacagATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTAATATTCATGGTGTGGCTTTCTACAGGAAAAAG
upper sequence: Vv16s0013g00300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G121427_T01 (Zea mays), 3'ss of exon 9
gtcaagctatctgtatcataatcttaaaacacatgaaagtacttgtatgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
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-------------------------------gttgaaaaaacgt-tatg--ctttcaaaaggtgtctttatgcttgcgacctaattttctcttgcacagATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGCAACAGGAAAATTCCCTTTAACATTCATGGTGTGGCTTTCTACAGGAAAAAG
upper sequence: Vv16s0013g00300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G34060.1 (Glycine max), 3'ss of exon 11
gtcaagctatctgtatcataatcttaaaac-acatgaaagtacttgta-tgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
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-----gtgat--gtttcttgcttttataactgttcaaaagcaattaccctatatctgactgaatgatttttac--tacaccctt---tcttcctgtttcagATATCAGGTAAAGCCTTCCAAATGGCTTTCCGTGATAGGAAAATACCATTTAACATTCATGGTGTGGCTTTTTACAGAAAAAAG
upper sequence: Vv16s0013g00300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G25120.1 (Arabidopsis thaliana), 3'ss of exon 11
gtcaagctatctgtatcataatcttaaaacacatgaaagtacttgta-tgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
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gtcagtccttttcttttccttgatgacatgctgttagaatgtttaaaattttaacatatttacttatgtgttggtaaaccatgaatgtactgatattcagGTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
ctttcat CT-rich tract
ataaactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaagctatctgtatcataatcttaaaacacatgaaagtacttgtatgaacacacataaactattggtatggtgcatgctgaagctttcatgccacagGTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA