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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatcaaatgttaaaacactccattgtagcatgcacctgcagtgcttctcttttcacccaatggagtgcattattgacttcaactatgtttttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAAATCAAGTTGAATTCCCCTAGCATCTGTCAACCGCTTTTCATCCTTTTA

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     AG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110702531|gb|EE081351.1|EE081351
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTTTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCT
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCT
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCT
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCT
EST: gi|71867011|gb|DT016066.1|DT016066
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGACGATACTGT
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGT
EST: gi|110693362|gb|EE069529.1|EE069529
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACCCAG                         TCCCCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     GGAAATGACCATGAGATTTATGAATC-GANACGGACTGTGGGTCACAC-G                         ANCACCAGCCCTGATGATACTGTAG
genomic: G-AAATGACCATGAGATTTATGAATCAGA-ACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagT-CACCAGCCCTGATGATACTGTAG
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|32246999|gb|CD712818.1|CD712818
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGAACGGCTCTCT
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCT
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     AAGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAAAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|34364395|gb|CF405980.1|CF405980
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCCTTGCC
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCC-TTGCC
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|110725007|gb|EE101335.1|EE101335
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACAG                         TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCCTTGC-
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCC-TTGCC
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     AG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG                         TCCCCACCCCTGATGATAATGTA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttttcacccaatggagtgcattattgacttcaactatgtttttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAAATCAAGTTGAATTCCCCTAGCATCTGTCAACCGCTTTTCATCCTTTTA
                          tattgac  putative branch site (score: 2)
                                      ctatgtttttttctc  putative PPT
                                    aactatgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatcaaatgttaaaacactccattgtagcatgcacctgcagtgcttctcttttcacccaatggagtgcattattgacttcaactatgtttttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAAATCAAGTTGAATTCCCCTAGCATCTGTCAACCGCTTTTCATCCTTTTA

gcatcaa
- - - - - - - - cactcca
- - - - - - - - - - - - - - -catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcaac