Sequence
atgc intronic sequence ATGC exonic sequencegtaatagactgctctggtctatatcagtttttgaaataccagtttttctagctttaaattctgcacctctctattagcctatttcattcttacttgtctgatatagattatggttggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G39270.2 (Glycine max), 3'ss of exon 10
gtaatagactgctctggtctatatcagtttttgaa-----atacc--agtttttctagcttta-aattctgcacctctctattagcctatttcattcttacttgtctgatatagattatggttggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
|| |||| | ||||| | | | | || | || || | ||| |||| |||| | ||| | | ||| |||||| || |||||||||| ||| || || || ||||||||||||||||||||||||| | | |||||||||||||||||||||| |||
---gtaaactgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttaattcaccctctagtgtatttcctttttacttgtcttgtatttttt-----------tacattgttgcagGTTTGGTATCCATCTCCAGGTGCTAATTCTTTTAAGCAGGAGGATTTCTTACAG
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 10
gtaatagactgctctggtctatatcagtttttg-----aaatacc--agtttttctagcttta-aattctgcacctctctattagcctatttcattcttacttgtctgatatagattatggtt-----ggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
|| |||| | ||||| | | | | || | || || | ||| |||| |||| | ||| | | || ||||| || ||||||||||| ||| || | || ||| | | || ||| ||||||||||||||||||||||||| | | ||||||||||||| |||||||| |||
---gtaaactgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttgattcaccctcaagtgtatttgctttttacttgtctggtatttttttttttttacatggatgttcattattgcagGTTTGGTATCCATCTCCAGGTGCTAATTCTTTTAAGCAGGAAGATTTCTTACAG
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G28350.1 (Arabidopsis thaliana), 3'ss of exon 10
-----------------------------------------------gtaatagactgctctggtctatatcagtttttgaaataccagtttttctagctttaaat-tctg----cacctctctattagcctatttcattcttacttgtctgatatagattatggttggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
| | | | | | | | || | | ||| ||| || | ||| | |||| | ||||||||| | | || || || | | || | || | || | ||| ||| |||||||||||||| |||| ||| | ||| ||||||| ||| ||||||||| |||||
gtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttctttttttttttttttttttctttttctcgttatag-ggttgccctgcccctaagtgtctgacagtaactctctatttgatccctgtcttttttatttttttatttgttataacgctgagattctat-attgcagGTTTGGTATCCTTCTCTAGGGGATGATCCTTTTATGCAAGAGGATTTCCTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatttcattcttacttgtctgatatagattatggttggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
tcatttc CT-rich tract
atatagattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatagactgctctggtctatatcagtttttgaaataccagtttttctagctttaaattctgcacctctctattagcctatttcattcttacttgtctgatatagattatggttggaagcttatcatttcagGTTTGGTATCCATCTCCAGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT