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...gtgggttccactacgaacttaattttaatttttggttgtatgctatttaatgcgtattatgttgtaattgtaagtggagacaattttgattattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTGGATGCTGTTGTCAAACGGGGCCTTGACAATCCTGCAGATATTGATCTT
species | Vitis vinifera |
transcript | Vv15s0024g00850.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCAT GGAATAATAACAGCTCCCATATTGTTTGCTATAGAAGAGTTCCCTCAATTGEST: gi|351026788|gb|FQ436441.1|FQ436441
genomic: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCATgtaatccttc ... tattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTG
EST: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCAT GGGATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTGEST: gi|351040061|gb|FQ425147.1|FQ425147
genomic: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCATgtaatccttc ... tattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTG
EST: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCAT GGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTG
genomic: CAGGCACATCAGCTTCCCTGGGGAAGGGTTCATTGTCTGACATCCGCCATgtaatccttc ... tattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTG
tttaatgcgtattatgttgtaattgtaagtggagacaattttgattattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTGGATGCTGTTGTCAAACGGGGCCTTGACAATCCTGCAGATATTGATCTT
ttttgat putative branch site (score: 4)
ttatttt CT-rich tract
acaattttgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttccactacgaacttaattttaatttttggttgtatgctatttaatgcgtattatgttgtaattgtaagtggagacaattttgattattttgcagGGAATAATAACAGCTCCAATATTGTTTGCTATAGAAGAGTTCCCTCAATTGGATGCTGTTGTCAAACGGGGCCTTGACAATCCTGCAGATATTGATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
gtgggtt
- - - -ccactac
- - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagacaa