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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgactccagactaaaatttatgagcccttgtcttgctcatcttggaacaatgttctacactgtttataactggtatattacagATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTAT

Basic information

species Vitis vinifera
transcript Vv15s0021g02610.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G14770.1 (Glycine max), 3'ss of exon 43
gtttgactccagactaaaatttatgagcccttgtcttgctcatcttggaacaatgttctacactgtttataactggtatattacagATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTAT
                               ||  ||  | ||  |        | ||||   | |||   | || | ||| ||||||||||||||| || || ||||| |||  ||||||||| |||||||||||  | |||||||||||||| ||   ||||||||| ||||| || |||||  
------------------------------gtgctttattaattatattgttgaggtctaa--tatttcccattgctttatgacagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC

upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 43
----------------------------------------------gtttgactccagactaaaatttatgagcccttgtcttgctcatc-----ttggaacaatgttctacactgtttataactggtatattacagATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTAT
                                               | |  |||  | |||   ||| |||   ||| | |||  | |      ||  |    |||  |  | | |||   | || | | |  |||||||||||||| || || ||||| |||  ||||||||| |||||||||||  | |||||||||||||| ||   ||||||||| ||||| || |||||  
gtgtgtaataaactaaagtttgaatgcattctctctgtctctctctctctctctcttg-ctattttttttgacagcttcttttgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttgctcatcttggaacaatgttctacactgtttataactggtatattacagATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTAT
                                   ttataac  putative branch site (score: 2)
                                tgtttataa  TA-rich tract