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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatttgaatcttggactgcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 3'ss of exon 10
-tcatttgaatcttggactgcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG---------
 | |||||      | |||           | |       | | |      || | |     ||   | ||||   |   | |  | | |    |    |||||||| |||||||| |||||||| |||||||||||||||||||| || ||| | |||||||| || |||||||| ||||| || | |||          
ttaatttgttcagagaactttaaaatccttagctgcttcagttcatttgctttcatgggaacatgtgtactgataatgtctata-tatatcttaacaacagGTTTGATGACACAAATCCAGAAGCCGAAAAGAAAGAGTATATTGACCACATTCAGGAAATCGTACACTGGATGGGATGGGAGCCCTACAAAGTTACATAT

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G048012_T01 (Zea mays), 3'ss of exon 9
--tcatttgaatcttggact--gcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG---------
  |  | |||  ||||  ||  | ||| |||     |    | |  |  | |  |    | |||    | |      |||  || |  | | |    |    ||||||||||||||||| || ||||||||||||||||| || || ||||| ||| ||||||| ||||| |||||||| |||||||| | |||          
attgctgtgagacttgtgctcagttttgcttgatttgttttaaggcattgtaatt----gcttcagctgatcaactcttttttttttgtttatttgaacaacagGTTTGACGACACAAATCCGGAAGCTGAAAAGAAAGAATACATAGATCACATTCAAGAAATTGTCCATTGGATGGGATGGGAACCCTACAAAGTAACATAC

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G032049_T01 (Zea mays), 3'ss of exon 10
tcatttgaatcttggactgct--tttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG---------
  |  |   | |  ||||  |  ||| ||   |   |   |  | ||||   | ||| |   |    | | |   ||||    |  | | |    ||   || ||||| |||||||| |||||||||||||||||||| || || ||||| ||| | ||||||||||| |||||||| ||||| || | |||          
--acattgctgtgagacttgtggtttgttttgcttgatttgttttaagacattgtaattgcttcagttctttttctttaccatttgtttatttgaataacagATTTGATGACACAAATCCAGAAGCTGAAAAGAAAGAATACATAGATCACATTCAGGAAATCGTCCATTGGATGGGATGGGAGCCCTACAAAGTAACATAC

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 10
----tcatttgaa--tcttggactgcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG
    ||  || ||  || |  |   |||   |   ||     ||    | |    || ||| ||||| |   |||  |||| |    ||   ||||||  |   |||| ||| || ||||| || ||||| ||||||||||||||||||||||| ||||||||||| || || |||||||||||| |||| ||||||
aatttctgttaaaattcctataagccttcattagaactttgtaattgaacatgcactataactttctttg--ttccaagttga----tggcttgtggcacttccagGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAGTATATTGATCACATTGAAGAAATTGTTCAGTGGATGGGTTGGAAACCATTCAAG

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G25120.1 (Glycine max), 3'ss of exon 10
-----------------tcatttgaatcttggactgcttttcttccaccgaaaaaggataa--agaagctttaagttt--------ctatagtttctgagttta--gttg-tgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG
                 |     |  |  |  | | || ||      || | ||    | |  ||||  || || ||         || ||  | |  ||||    |||| ||   ||| |   |    ||| ||| ||    || || ||||| ||| |||  |||||||||||||||||||||||||| ||||| ||||                    
atgtgttcctagaagtatttcacgtttactaaatttctgttgaaatccctataagcattcattagaactttgaaattggacatgcactttaactaccaagTTCCACGTTGATGGCTTGTTGGCCTTCCCGGTATGATGATTACAATCCTGAAGCGGAACAGACGGAGTATATTGATCATATTGAAGAAAT-GTCCAGTGGA--------------------

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 3'ss of exon 10
---------------------tcatttgaatcttggactgcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgtt---agGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG
                     | | |||| | |   ||  |||| | |             ||||  |  |||     |||| ||    |   ||| | |  | ||          |||   |||| ||| || ||||| ||||| || |||||| ||||||||||| |||||||||||||||| ||  | ||||||||||||||||| ||||||
gtaaaaaaagtttggttgcttttacttgagtttcatacatctttacctttct---------ataacaatccttgtttcttctgtaagcacaatgttcaatattccttgaaaatctggttttcagGTATGATGATACAAATCCAGAGGCAGAAAAGGAAGAGTATATTAATCATATTGAAGAAATTGTTAAGTGGATGGGTTGGGAACCCTTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035456|gb|FQ463301.1|FQ463301
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351016500|gb|FQ423927.1|FQ423927
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351016499|gb|FQ423926.1|FQ423926
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351025032|gb|FQ433449.1|FQ433449
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351034412|gb|FQ463225.1|FQ463225
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351033348|gb|FQ446580.1|FQ446580
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351027650|gb|FQ446817.1|FQ446817
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351024489|gb|FQ426298.1|FQ426298
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|352790073|gb|FQ479683.1|FQ479683
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351046338|gb|FQ448643.1|FQ448643
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACGAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351054204|gb|FQ450286.1|FQ450286
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351019825|gb|FQ439642.1|FQ439642
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351039502|gb|FQ461369.1|FQ461369
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351026622|gb|FQ436275.1|FQ436275
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349833020|gb|FQ416398.1|FQ416398
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|352789985|gb|FQ479595.1|FQ479595
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351033263|gb|FQ462035.1|FQ462035
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351040162|gb|FQ425248.1|FQ425248
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351054398|gb|FQ450481.1|FQ450481
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351037106|gb|FQ456939.1|FQ456939
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349832664|gb|FQ422022.1|FQ422022
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351056659|gb|FQ443286.1|FQ443286
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351028040|gb|FQ425941.1|FQ425941
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351043435|gb|FQ451487.1|FQ451487
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351042076|gb|FQ456286.1|FQ456286
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351034920|gb|FQ458277.1|FQ458277
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351046877|gb|FQ454487.1|FQ454487
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351035498|gb|FQ463343.1|FQ463343
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGGGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351031204|gb|FQ445031.1|FQ445031
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351022167|gb|FQ438752.1|FQ438752
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351051825|gb|FQ455239.1|FQ455239
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349815577|gb|FQ400733.1|FQ400733
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351036533|gb|FQ457246.1|FQ457246
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351052468|gb|FQ452501.1|FQ452501
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349827622|gb|FQ422490.1|FQ422490
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351024264|gb|FQ423687.1|FQ423687
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351025469|gb|FQ435161.1|FQ435161
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351025913|gb|FQ427925.1|FQ427925
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351044016|gb|FQ431447.1|FQ431447
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349828962|gb|FQ419295.1|FQ419295
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|352798342|gb|FQ480367.1|FQ480367
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351016726|gb|FQ424153.1|FQ424153
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351026266|gb|FQ428278.1|FQ428278
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351014382|gb|FQ437384.1|FQ437384
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349823406|gb|FQ423217.1|FQ423217
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351025836|gb|FQ427848.1|FQ427848
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349830206|gb|FQ420466.1|FQ420466
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351039874|gb|FQ464912.1|FQ464912
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|349819006|gb|FQ411701.1|FQ411701
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGGCACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|161715288|gb|FC064876.1|FC064876
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351036393|gb|FQ458768.1|FQ458768
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351042077|gb|FQ456287.1|FQ456287
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
EST: gi|351037820|gb|FQ464261.1|FQ464261
EST:     TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAG                         GTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT
genomic: TTTGTTAGCTTTGGCCTGGCAAAAGAGAGAGGTGGATGCTGCTACCTAAGgtgagaattg ... gctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG
     tttaagtttctata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatttgaatcttggactgcttttcttccaccgaaaaaggataaagaagctttaagtttctatagtttctgagtttagttgtgctctgtggctatgttagGTTTGACGACACAAACCCAGAAGCTGAAAAGAAAGAGTATATTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - -ggactgc
- - - - - - - - - - - - - -ccaccga
- - - - - - - - - - - - - - - - - - - ggataaa