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gtgattttcacacttctcttaaagtttatggcatcttgaactttactgtatagcttgctgagctttaatttgatatgcttttaataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCAGGTTGGAAAAGAAAATGCTAAATGCATGCTTGAAGGCTACAGTTGATT
species | Vitis vinifera |
transcript | Vv14s0171g00310.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTG TTGGCAGATAGTAATTTGAACCCGAAGAAGCTAGTTGCCACACAGCTTGTCEST: gi|30131113|gb|CB916452.1|CB916452
genomic: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTGgtgattttca ... taataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
EST: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTG TTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCEST: gi|27585508|gb|CB008203.1|CB008203
genomic: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTGgtgattttca ... taataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
EST: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTG TTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCEST: gi|30137480|gb|CB922818.1|CB922818
genomic: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTGgtgattttca ... taataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
EST: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTG TTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCEST: gi|30129363|gb|CB914702.1|CB914702
genomic: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTGgtgattttca ... taataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
EST: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTG TTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
genomic: AGAGACGGTTGGCTGGCTATCCTACCACTATGAGTGAAGACGAGTGTTTGgtgattttca ... taataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTC
tgaactttactgtatagcttgctgagctttaatttgatatgcttttaataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCAGGTTGGAAAAGAAAATGCTAAATGCATGCTTGAAGGCTACAGTTGATT
ttttaat putative branch site (score: 3)
tgctttt CT-rich tract
tttaatttgatatgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttcacacttctcttaaagtttatggcatcttgaactttactgtatagcttgctgagctttaatttgatatgcttttaataattagTTGGCAGATAGTAATTTGAACCCAAAGAAGCTAGTTGCCACACAGCTTGTCAGGTTGGAAAAGAAAATGCTAAATGCATGCTTGAAGGCTACAGTTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG