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...gctgggaacattcttgatggtagaagtgtgctttgtagtagtttactgactttctatgcctccacaaatgttttgacgaagttctttctaccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAG TGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATEST: gi|22009982|gb|BQ795016.1|BQ795016
genomic: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAGgtgagccttg ... ccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAAT
EST: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAG TGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATEST: gi|110701989|gb|EE080193.1|EE080193
genomic: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAGgtgagccttg ... ccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAAT
EST: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAG TGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATEST: gi|37190189|gb|CF609538.1|CF609538
genomic: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAGgtgagccttg ... ccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAAT
EST: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAG TGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAAT
genomic: ACTGGGGTTGACTTTTGCAAGAAACTATGTGGAGTTTCTATTGTCCGAAGgtgagccttg ... ccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAAT
ctgactttctatgcctccacaaatgttttgacgaagttctttctaccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG
ttctttctaccattt CT-rich tract
aaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgggaacattcttgatggtagaagtgtgctttgtagtagtttactgactttctatgcctccacaaatgttttgacgaagttctttctaccatttgtagTGGTGAAAGTATGGAGAATGCATTACGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - cttgatg
- - - - - - - - - - - - - - tgctttg