Sequence
atgc intronic sequence ATGC exonic sequence...aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os09g33530.1 (Oryza sativa), 3'ss of exon 10
---------------------------------------------------------------------aaaatatgtgtgcatgtatatttcatagcca---tgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttca-tattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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gtagcaacagttttggcagatggatcatagagccagtgttatcatgaaatcagtttgaatttggcagatagatcatagagtcagtgataccatgaaatcaatctgaatttggcatatagaacctgtgagatcatgaaatcaatctactgactagaggattggctgttcttcagGGAGAGGAGTATAAGTTGTTTTGGCCAGAGCAGTCTGAATTTGTGAGGATGGCATCAAGGTTTGGAGCAACAATAATACCATTTGGAGTAGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G05580.1 (Glycine max), 3'ss of exon 10
-aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcat-attgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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tatgaaattttt-taggctcactttatctgtctct-gtctctatttatgctttgaaatataccagagtcgtttaaaatctccaacattgcattaattctcagGGTGAAGAATACAAGTTATTCTGGCCTGAACAATCCGAGTTTGTAAGGATGGCAGCAAGATTTGGAGCCAAAATAGTACCTTTTGGTGTAGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 12
-aaaatatgtgtgcatgtatatttcata-gccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaat-tgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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ttggttattttt-tagacccactttatttgtctctctctgtatttgtgctttgaaatacactagaatag--tttaaaatcttcagcattttaataattttcagGGTGAAGAATACAAGTTATTCTGGCCTCAACAATCTGAGTTTGTAAGGATGGCAGCAAGATTTGGAGCCAAAATTGTACCTTTTGGTGCAGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G41120.1 (Arabidopsis thaliana), 3'ss of exon 10
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtt-tagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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------------------------gtgattatgtattttccatatttt--ccttcattttaatttttgaggctttatatctaaagacacattttataacagGGTGAAGAATACAAGTTATTTTGGCCAGAACATTCGGAGTTTGTAAGGATAGCATCTAAATTTGGAGCAAAAATCATTCCTTTTGGAGTTGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G26840.1 (Arabidopsis thaliana), 3'ss of exon 10
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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---------gtg-atatatagtttgtaaactttttccgggtttctgcattcttgaaacttgttattttagaggctttaatgaacaaacaaaatt-tgcagGGTGAAGAATACAAGCTGTTTTGGCCAGAACGGTCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAGCCAAAATTGTTCCTTTTGGTGTTGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G26820.1 (Arabidopsis thaliana), 3'ss of exon 12
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggt--cacaattttaaa--ataccttttgcaatactcaattgttcat----attgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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--gttatgt---tataattaatatattgttgcgtggtgacctttttcggtttctacaattttggatattagtgttttggaggttaacatgtaaagagagacttcacagGGTGAAGAATACAAGCTGTTTTGGCCAGAACAATCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAGCGAAAATCGTTCCTTTCGGTGTTGTTGGAGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G41130.2 (Arabidopsis thaliana), 3'ss of exon 10
aaaatatgtgtgcatgtatatttcatagccatgaagtaga-catgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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------------------------gtaatgattagatatctcatatttggccttcgtttt--aactttgaagcgttacatagaatgacacat-ttctacagGGTGAAGTATACAAGTTGTTTTGGCCAGAACATTCAGAGTTTGTAAGGACCGCATCTAAATTTGGAACAAAAATCATTCCTTTTGGGGTTGTTGGTGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ23061 (Selaginella moellendorffii), 3'ss of exon 10
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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-------------------------------------------gtatggtatttatctcttcttttctttgtcaacttaccatctggatttttttcccagGGAGAGGAATACAAGCTCTTTTGGCCAGAACAGTCCGAGTTTGTCCGAATGGCTGCGCGTTTCGGTGCCACCATAATTCCTTTCAGCTGCGTTGGCGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ30477 (Selaginella moellendorffii), 3'ss of exon 10
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
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-------------------------------------------gtatggtatttatctcttcttttctttgtcaacttaccatctggatttttttcccagGGAGAGGAATACAAGCTCTTTTGGCCAGAACAGTCCGAGTTTGTCAGAATGGCTGCTCGTTTCGGTGCCACCATAATTCCTTTCAGCTGCGTTGGCGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
aattttaaaatacctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaatatgtgtgcatgtatatttcatagccatgaagtagacatgtcggggtcacaattttaaaataccttttgcaatactcaattgttcatattgtttagGGTGAGGAATACAAGTTGTTTTGGCCAGAACAATCTGAGTTTGTCCGAATTGCGGCTAGGTTTGGAGCCAAAATTATACCCTTTGGAGTTGTTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
aaaatat
- - - - - -gcatgta
- - - - - - - - - - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - -acatgtc