Sequence
atgc intronic sequence ATGC exonic sequencegtaggaatttttctttttccttttttaacccaaataatatgtttacaaattcttttctgcgaagacattatacatgtatatatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G27540.1 (Glycine max), 3'ss of exon 3
gtaggaatttttctttttccttttttaacccaaataatatgtttacaaattcttttctgcgaagacattatacatgtata-tatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
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------------------------------------gtatttttattaattattataaatttccacataaaatgtatttagtgtgtatttaataatgttt-----atggctt-----tgggttttat---tgtcagGTAATTAGGATTCACTCTCCCATGAGGTCTAAGAGGATGAAAGACTGGTCAGATATACCTAGTCGAGAAATGATAAGTGAAGCACATGCAGCAGCATTGC
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 10
gtaggaatttttctttttccttttttaacccaaataatatgtttacaaattcttttctgcgaagacattatacatgtatatatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
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------------------------------------gtatttatattaattattat-----aaatttccacataaa-atgtatttagtggtgtgt-attttataatgtttttggctttgggtttta--ttgtcagGTAATTAGAATTCACTCTCCCATGAGGTCTAAGAGGATGGAAGACTGGTCAGATATACCTAGTAGACAAATGATAAGCCAAGCACATGCAGCAGCTTTGC
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaggaatttttctttttccttttttaacccaaataatatgtttacaaattcttttctgcgaagacattatacatgtatatatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
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------------------------------------------gtacagataacttgtta--aaaccataattctactttgctctaatcg--ttaaactttttg--tggtctctctgaataaatcaagcttggcagGTAATACGGATCCATTCTCCCATGAGATCCGAGAGAAAGGAGGACTGGTCAAGTGTGCCAAGTCGTGAAATGATAAGCAGAGCTCACACAGCTGCCTTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688707|gb|EC923991.1|EC923991EST: AGCTCCTAGAGTGCCTTGGG GTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCA
genomic: AGCTCCTAGAGTGCCTTGGGgtaggaattt ... tgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
aacaaattatgatttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaggaatttttctttttccttttttaacccaaataatatgtttacaaattcttttctgcgaagacattatacatgtatatatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagGTTATTAGGATTCATTCTCCCATGAGAGCTGAGAGGAAGCAAGATTGGTCAGATGTTCCAAGTCGAGCAATGATAAGCAGAGCACATGCTGCGGCCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC