1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgtttggatattttactcttggttttcacatatacaaacacacacacacagaggcatagttttatctgaatttataattttatttactcatgtacccagATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTTCATCAGCTTTTGATGTCACAACAAAG
species | Vitis vinifera |
transcript | Vv14s0068g00420.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATATTGGGATAGTTTGGCTTATGAAGGCGGTGATTTGTGTTACAACCAAG ATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTTEST: gi|110413904|gb|EC979720.1|EC979720
genomic: ATATTGGGATAGTTTGGCTTATGAAGGCGGTGATTTGTGTTACAACCAAGgtgaccactt ... atgtacccagATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTT
EST: ATATTGGGATAGTTTGGCTTATGAAGGCGGTGATTTGTGTTACAACCAAG ATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTT
genomic: ATATTGGGATAGTTTGGCTTATGAAGGCGGTGATTTGTGTTACAACCAAGgtgaccactt ... atgtacccagATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTT
cacacagaggcatagttttatctgaatttataattttatttactcatgtacccagATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTTCATCAGCTTTTGATGTCACAACAAAG
atagttttatctgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttggatattttactcttggttttcacatatacaaacacacacacacagaggcatagttttatctgaatttataattttatttactcatgtacccagATGCTCATCGACAAAGGATAATTAACTGGATCAATGCCACAGATGGTACTTCATCAGCTTTTGATGTCACAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
-tgtttgg
- - - - - - - - ctcttgg
- - - - - - - - - - - - - - - - - -caaacac
- - - - - - - - - - - - - - - - - - - acacaca