Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcttgatttctataccgaccatttcaataattgatgcttttggattttgtatcgaatttatctgaaaatgttctcttgtttgcagATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCT

Basic information

species Vitis vinifera
transcript Vv14s0066g01050.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 3'ss of exon 9
-----------gtgagctcttgatttctat-accgaccatttcaataattgatgcttttggattttgtatcgaatttatctgaaaatgttctcttgtttgcagATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCT
           |||  |  ||  || || | |  | | | ||    |  ||   |||  |||   |      | | |  |||      |     | || | |||| || ||||| |||||||| ||||||||||| || || || || |||||||| || ||||||||||||||  | || | ||||
catctcttgtggtgttcagtttgttgctttcatgggcgagtttgggatgtgcgactt--ggagggtaagcaaagtgtgactgggtggatgtgggtatt-gtagATATTCCACAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 8
-----gtgagctcttgatttctatac-cgaccatttcaataattgatgcttttggattttgt---atcgaatttatctgaaaatgttctcttgtttgcagATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCT
        || ||  |  | || |        ||| ||| ||| |     |||||  ||||    | | |  |  |  |    || | || || | |||| |||| |||||||||||||| ||||||||||||||||| || || || || ||||| |||||||| |||||  |||| | ||||
atgccagtagatcgaggctcctttgtatcgtgattgcaagaatggggttctttgggatttgcctaaccaacgtggtacggggttggtgtcgtgatggcagGTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCT

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 9
-----------gtgagctcttgatttctataccgaccatttcaataattgatgcttttggattttgtatcgaatttatctgaaaatgttctcttgtttgcagATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCT
           |||  |  ||  || || |   |  ||| |     ||    |  || |||   |      | | |  |||      |     | || | || | || || || |||||||| ||||||||||| || || || || |||||||| || ||||||||||||||  | || | ||||
catctcttgtggtgttcagtttgttgctttcatgggcatgtgtgggatgtgcgactt-ggagggtaagcaaagtgtgactgggtggatgtgagtatt-gtagGTATTCCATAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgcttttggattttgtatcgaatttatctgaaaatgttctcttgtttgcagATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCT
 aattgat  putative branch site (score: 4)
                                        ttctcttgttt  putative PPT
                        aatttatctgaaaat  TA-rich tract