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gtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT
species | Vitis vinifera |
transcript | Vv14s0060g00600.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|34546629|gb|CF514861.1|CF514861
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAATGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|156737184|gb|EV241305.1|EV241305
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTTCA-GACTEST: gi|22008977|gb|BQ794011.1|BQ794011
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTT-CAAGACT
EST: CAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30253239|gb|CB970790.1|CB970790
genomic: CAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: CTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTCGGTTTCAAGACTAEST: gi|34546808|gb|CF515040.1|CF515040
genomic: CTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAATGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110700433|gb|EE078469.1|EE078469
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110399980|gb|EC966516.1|EC966516
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30129168|gb|CB914507.1|CB914507
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: CCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30131217|gb|CB916556.1|CB916556
genomic: CCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: CCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|349828876|gb|FQ419209.1|FQ419209
genomic: CCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30134321|gb|CB919659.1|CB919659
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|87584334|gb|DY473544.1|DY473544
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110424518|gb|EC990881.1|EC990881
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110367470|gb|EC931404.1|EC931404
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110416992|gb|EC983012.1|EC983012
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110423991|gb|EC990344.1|EC990344
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30302437|gb|CB979231.1|CB979231
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|22014270|gb|BQ799304.1|BQ799304
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110424369|gb|EC990727.1|EC990727
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|34543640|gb|CF511872.1|CF511872
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110371622|gb|EC935735.1|EC935735
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30136122|gb|CB921460.1|CB921460
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110408420|gb|EC974056.1|EC974056
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|352789914|gb|FQ478729.1|FQ478729
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|22014271|gb|BQ799305.1|BQ799305
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGEST: gi|156737183|gb|EV241304.1|EV241304
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAG
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|32245847|gb|CD711666.1|CD711666
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110694879|gb|EE072256.1|EE072256
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|34543715|gb|CF511947.1|CF511947
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|34547238|gb|CF515470.1|CF515470
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|37187368|gb|CF606721.1|CF606721
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|33404123|gb|CF209750.1|CF209750
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110729460|gb|EE105432.1|EE105432
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|110386931|gb|EC951566.1|EC951566
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|30129063|gb|CB914402.1|CB914402
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTAEST: gi|27582365|gb|CB005060.1|CB005060
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
gtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT
tccttgtt CT-rich tract
tctcatcttatcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG