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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttaaaaattttgaatatggaatctgattgctgatttttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG

Basic information

species Vitis vinifera
transcript Vv14s0060g00210.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 3'ss of exon 10
gtgcttaaaaattttgaatatggaatctgattgctgatttttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
||    |  | | |    |      |       ||||| ||  || |  |  |  |||   | || || ||| |||||||||||||  | || || ||||| |||||||||||| ||||||| || || || ||||| |||||||| ||||||  ||
gtatgcagcactgtgatttgcttggtacagacactgatgttgtacacacttgaccaattt-tcatattgcagGTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAG

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G22190.2 (Glycine max), 3'ss of exon 10
gtgcttaaaaattttga-ata-tggaatctgattgctg-atttttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
|| ||| ||  |||  | ||| | || | |  || | | ||  |   ||| ||    || | | ||  ||||||||||||||||||||| ||| | |||||||| ||||| |||||| | ||||||||||| || |||||||||||||||||||||||||
gttcttgaagctttcaacatacttgagtttttttaccgtatgatctgctcattgtggtatttatttg-gtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G28200.2 (Glycine max), 3'ss of exon 10
gtgcttaaaaattttga-ata-tggaatctgattgctgattt-ttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
|| |||  |   ||  | ||| |    | |  || ||| ||  |   ||| ||    || | | ||  ||||||||||||||||||||| ||| | |||||||| ||||| |||||| | ||||||||||| || |||||||||||||||||||||||||
gtccttgtagcgttcaacatacttttgtatttttactgtttgatctgctcattgtggtatttatttg-gtttcagATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G26680.2 (Arabidopsis thaliana), 3'ss of exon 10
----gtgcttaaaaattttgaatatggaatctgattgctgattt--ttcactctttccaataatg-aattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
    ||   | | |      | | |    ||    |  | | ||  |  |||  | |  ||| ||   |   |||||||||||| || |||||  | |||||||||||||| ||||| ||| |||| ||  | || || ||||| |||||||||||||| ||||
gtttgtctctcacacacactattctttcttcaacgtattaagttaatgaactgatccttatattgtggtctcgtttcagATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggaatctgattgctgatttttcactctttccaataatgaattatgtttcagATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG
              tgctgat  putative branch site (score: 3)
                                   aataatgaattatgtt  TA-rich tract