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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgaattgcacactgaactccacttcctgccccattctttcccataaatctgacacttgctctaatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCTGTCTAAAATGATTTAGTGTTTGTGTATGCCATGCTCTAAATTTCAAGGA

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300481|gb|CB977275.1|CB977275
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110379523|gb|EC944723.1|EC944723
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|30323423|gb|CD006685.1|CD006685
EST:     GATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: GATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110727225|gb|EE103744.1|EE103744
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110362584|gb|EC926127.1|EC926127
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|30130413|gb|CB915752.1|CB915752
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|46918393|gb|CN547722.1|CN547722
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110422750|gb|EC989080.1|EC989080
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacttcctgccccattctttcccataaatctgacacttgctctaatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCTGTCTAAAATGATTTAGTGTTTGTGTATGCCATGCTCTAAATTTCAAGGA
                                         ctctaat  putative branch site (score: 3)
                         ataaatct  TA-rich tract