Sequence
atgc intronic sequence ATGC exonic sequence...aaccagggaaattttttgttgtgttctttttcctttctggcttgaattataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G36650.1 (Glycine max), 3'ss of exon 10
-------aaccagggaaattttttgt-----tgtgttctttttcctttctggcttgaattataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaa------cagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
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gtaggttgtccattcatttcatgagtcaacatatataacttatactcagctgcctccttaaaaatctagttgagaagacaaacagaaataacgtgat-attttataatacttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAACACCACTTGAGCGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G30270.2 (Glycine max), 3'ss of exon 10
-------------------aaccagggaaattttttgttgtgttctttttcctttctggcttgaatt-ataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC------
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gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcat-gatcattttgtaat--acttgct---caggttcagGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACACATGCTG
upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G30270.1 (Glycine max), 3'ss of exon 10
-------------------aaccagggaaattttttgttgtgttctttttcctttctggcttgaatt-ataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
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gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcat-gatcattttgtaat--acttgct---cagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
ttataac putative branch site (score: 2)
atcaatttatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaccagggaaattttttgttgtgttctttttcctttctggcttgaattataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - agggaaa
- - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - tcctttc
- - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - cctgcat