Sequence
atgc intronic sequence ATGC exonic sequencegtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G37330.1 (Glycine max), 3'ss of exon 11
gtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
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----------------------------gtgagaatatgagaaagtctttgttattctgtagtgcatttgtttagacacatgcagc-------atgtgtct-gatct-gcattct---------ctacattccac--tgacatgattttatcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G30070.1 (Glycine max), 3'ss of exon 11
gtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
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----------------------------gtgagaatttgagaaaatctttgttattctgtagctcatttgtttaggcacatgcagc-------atgtgtct-gatctgcatttct-cttcatttcactgac-----atgattc---tgtcaatatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAA
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G08720.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
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----------------------------gtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctact-ggcatgcttgttataatctggggtacggcttcttctctaatcacatgcattgttaat-------tttaccagCCTGAATGGATGGCTCCAGAAGTTCTACGCAATGAGCCCTCAAATGAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303225|gb|CB980019.1|CB980019EST: CACGCCTGAAGCACAACACATTTTTGTCATCCAAATCAACTGCTGGAACG CCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
genomic: CACGCCTGAAGCACAACACATTTTTGTCATCCAAATCAACTGCTGGAACGgtgagaatct ... tgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
tttctgttt CT-rich tract
atttaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagCCTGAGTGGATGGCCCCAGAAGTTCTCCGCAATGAAAATTCAAATGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT