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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccagCATCAAATGGAAATCCGCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCAGTTCAATGCTTACCAACAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00500.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccagCATCAAATGGAAATCCGCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCAGTTCAATGCTTACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||| ||     || | ||||||| |||||||||||||| | |  | ||||||||||||| ||||||||| | | ||| | | | ||| | |||||||||
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca-cttcaacatgt-gtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG

upper sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccagCATCAAATGGAAATCCGCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCAGTTCAATGCTTACCAACAG
|| | |   ||||   | | |   ||   |||||| |    |  ||| ||   ||     | | ||      || |   |||   |||| ||||||||  |||| |||||||||  ||||||||||||||||||||| || |||   || ||  | || ||||||
gtgattcaccttc--ttctacttcatatatatcttatctt-tacttagaaaccttgatcattaagattgatggtctgtcttt---cagCTTCAAATGGCGATCCCCGAACTCCAAGTTCTTTGCACTACATTGATCCATCAGGCAGATTAAACTCATATCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccagCATCAAATGGAAATCCGCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCAGTTCAATGCTTACCAACAG
                                        ttttatttt  CT-rich tract
        tttttataatttttct  TA-rich tract