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gtacaggctgaaagtcctcctcccttaatttcttcccctcctctcttttcctggattcaatcaaaactcatagtcttaagtggggtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCACAAGAGTGAAGTACTTCCAAGACTATTTGATAGAATTAAAGAAGGGCAT
species | Vitis vinifera |
transcript | Vv14s0006g01790.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|71867004|gb|DT016059.1|DT016059
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|77585036|gb|DV221603.1|DV221603
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|110426783|gb|EC993204.1|EC993204
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|352777638|gb|FQ466691.1|FQ466691
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|352778016|gb|FQ467069.1|FQ467069
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349833335|gb|FQ416713.1|FQ416713
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349820762|gb|FQ404136.1|FQ404136
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCANGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349817382|gb|FQ405386.1|FQ405386
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCACAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|352777869|gb|FQ466922.1|FQ466922
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349811362|gb|FQ407588.1|FQ407588
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: TACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCEST: gi|349826361|gb|FQ417858.1|FQ417858
genomic: TACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAA-CGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACC
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|351013683|gb|FQ433835.1|FQ433835
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|71867277|gb|DT016332.1|DT016332
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|351028613|gb|FQ446286.1|FQ446286
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|351017081|gb|FQ424508.1|FQ424508
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349807775|gb|FQ402166.1|FQ402166
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|351029000|gb|FQ435001.1|FQ435001
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|349815167|gb|FQ410390.1|FQ410390
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACEST: gi|351029862|gb|FQ427702.1|FQ427702
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACAC
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCAEST: gi|77578566|gb|DV218076.1|DV218076
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
EST: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACG GCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
genomic: CTACGTGAAGGAGCAGTATGGAAACCCACCTATAATCATCTCAGAAAACGgtacaggctg ... gtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCA
cctctcttttcctggattcaatcaaaactcatagtcttaagtggggtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCACAAGAGTGAAGTACTTCCAAGACTATTTGATAGAATTAAAGAAGGGCAT
aatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaggctgaaagtcctcctcccttaatttcttcccctcctctcttttcctggattcaatcaaaactcatagtcttaagtggggtggtggcagGCATGGACGATCCAGGGAACGTGACACTCCCCATGGCATTGCACGACACCACAAGAGTGAAGTACTTCCAAGACTATTTGATAGAATTAAAGAAGGGCAT
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