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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttatcgtctcctttaaatttctgtcttatccttatctaatagttgctaccattgttgtatgttgtctttctttcccttgtttctatgagtgtgcttggggcggttggggttggggatagtatatatttacttattttttgcaatgttaacatagttctttcctttagCTTCATGGTGCAGAAGCTTTTCTCACTTATAGATCAGACTTCTGTGCCAGACAACCCTGATGTATTGCAGAATCAGGAAGTATTACTGCCTGGTCACTTG

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 14
gttggttatcgtctcctttaaatttctgtcttatccttatctaatagttgctaccattgttgtatgttgtctttctttcccttgtttctatgagtgtgcttggggcggttggggttggggatagtatatatttactt-attttttgcaatgttaacatagttctttc-ctttagCTTCATGGTGCAGAAGCTTTTCTCACTTATAGATCAGACTTCTGTGCCAGACAACCCTGATGTATTGCAGAATCAGGAAGTATTACTGCCTGGTCACTTG
                      ||     |||   ||| | |  ||  || |    ||||     ||   |||   ||   |  | |  |  ||     ||   || |  ||  ||  | || || |      | ||    |||||   || |   |   |  |  | ||||||||||||| ||||||| ||||||||||||||||||||||| || ||||| ||||||||||||   ||||| ||||| || || ||||| ||||| ||| ||
---------------------gttaggcacttgctcttgttttttatgtgatgattttgtaactagtaaccttaaattgtttcttatggacaagaaatatttttgctggaggatttatgtattgttttctcacattttgggttttggtttgctcctactttcttccctctttagCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAGACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGACACCTG

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 5
gttggttatcgtctcctttaaatttctgtcttatccttatctaatagttgctaccattgttgtatgttgtctttctttcccttgtttctatgagtgtgcttggggcggttggggttggggatagtatatatttacttattttttgcaatgttaacatagttctttcctttagCTTCATGGTGCAGAAGCTTTTCTCACTTATAGATCAGACTTCTGTGCCAGACAACCCTGATGTATTGCAGAATCAGGAAGTATTACTGCCTGGTCACTTG
||| |  |    ||| | |   ||| | | | ||  || |  ||||  |         ||  ||| |  |  ||  ||     |     ||   | |||| | ||   ||     | |   |  || || ||   || |  || ||        | |  |||  | ||||||||||||| ||||||| |||||||||||||||||||| || || ||||| ||||||||||||   ||||| ||||| || || ||||| ||||| ||| ||
gttaggcacttgctcttct---tttttatgtgatgatttttgaataacta--------gtcatatttaattgtttcttatggagaagaaatatttttgctggagg-atttattaattgttttcttacattttgggttttggttggctcctc---ctttcttccctgctttagCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatagtatatatttacttattttttgcaatgttaacatagttctttcctttagCTTCATGGTGCAGAAGCTTTTCTCACTTATAGATCAGACTTCTGTGCCAGACAACCCTGATGTATTGCAGAATCAGGAAGTATTACTGCCTGGTCACTTG
                               tgttaac  putative branch site (score: 2)
                                       tagttctttccttt  CT-rich tract
       tatatatttacttatt  TA-rich tract