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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcattacatttgcttatatgggctactgcattcattaaaaacacgttttcattttgcctcatttgttgatacttatgtagGTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGAGAGTGCAGACACTTTGCAAGTGCTTTTGCAAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G32960.1 (Glycine max), 3'ss of exon 18
----------------------------------------gtatgtcattacatttgcttatatgggctactgcattcattaaaaacacgttttcattttgcctcatttgttga--tacttatgtagGTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGAGAGTGCAGACACTTTGCAAGTGCTTTTGCAAG
                                          | | ||| |||  |  ||| |   | |  |   |||  |   |  |  |      ||      | ||  ||   ||  |||| ||||||||||||| ||  | ||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||||||
gtatgcataatttcttttcacatttagtgcaacattcagaaaaaggcataacaactttttagaactggttttcgcttctctggcatgagatacaagattaaaagtaattcatgctctaaatatgcagGTTTTCTGCACAAAGAAAAAACCAAATTGCAATGCATGCCCAATGCGAGCAGAGTGCAGGCACTTTGCAAGTGCTTTTGCAAG

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G34600.1 (Glycine max), 3'ss of exon 16
----------------------------------------gtatgtcattaca--tttgcttatatgggctactgcattcattaaaaacacgttttcattttgcctcatttgttgat--acttatgtagGTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGAGAGTGCAGACACTTTGCAAGTGCTTTTGCAAG
                                          | | ||| |||  ||| ||   |  || |  ||| ||||     |  |  |      ||      | ||  || |  |  |||| ||||||||||||| ||  | |||||||| ||||||||||| |||||| | | ||||||||| |||||||||||||||||||||||
gtatgcataatttcttttcacatttagtacaacattcagaaaaaggcataacaatttttctagaactggtttttgc-ttcacaggcatgagatacaagattaaaagtaattcatgctctaaatatgcagGTTTTCTGCACAAAGAAAAAACCAAAATGCAATGCATGTCCAATGCGAGCAGAGTGCAGGCACTTTGCAAGTGCTTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023598|gb|FQ432981.1|FQ432981
EST:     GTATGAGCTACACTATCAGTTGATTACATTTGGAAAG                         GTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGA
genomic: GTATGAGCTACACTATCAGTTGATTACATTTGGAAAGgtatgtcatt ... acttatgtagGTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcattcattaaaaacacgttttcattttgcctcatttgttgatacttatgtagGTTTTCTGCACCAAACATAAACCAAATTGCAATGCATGCCCAATGAGGGGAGAGTGCAGACACTTTGCAAGTGCTTTTGCAAG
                                      tgttgat  putative branch site (score: 4)
     ttcattaaaaa  TA-rich tract