Sequence
atgc intronic sequence ATGC exonic sequence...ttgtatggctgttgatttaattctgatttagaactctgcagctccagcaagctgcatcagcatttgaggaaattctaacactgtgttagcatattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 9
ttgtatggctgttgatttaattctgatttagaactct---gcagctccagcaagctg-catcagcat-ttgaggaaattctaacactgtgttagcatattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
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---taacatt-tagaaaaaattaaaaagaaaggctcttgtacagtgccttaagtccatcattaccttgcttggcaaactgttaaaatttatgctcgtctt-acagGCAACAATTTTTGGAACCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTTACCAAC
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 9
--ttgtatggctgttgatttaattctgatttagaactctgcagctccagcaagctgcatcagcatttgaggaaattctaacactgtgttagcatattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
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aatcagaaaaataac-atttagaaaaaaattaaaaataaagacaacagtgccactccatgtttaccttgtcaaactgtcaaaatttatgctcatctt-acagGCAGCAATTTTTGGAACCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAACTCATCCTTACCAAC
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G04510.1 (Arabidopsis thaliana), 3'ss of exon 9
------ttgtatggctgttgatttaattctgatttagaactctgc----agctccagcaagctgcatcagcatttgaggaaattctaacactgtgttagc--atattc-----acagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
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gtgggggcatttaagcttcatttgttttctgggcagcaaccttgttcaaagctccta-aaactatacttcagttagacaatctgctaatttttttcttgtgaatatttgataaacagGCAACAGTTTTTAGAGCCAGGAGAATCGGTTCTGATGATATCAGCGGTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGCTAATACTCACCAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458567|gb|CD799741.1|CD799741EST: CCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATG GCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAA
genomic: CCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggttt ... atattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcaagctgcatcagcatttgaggaaattctaacactgtgttagcatattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
ttctaac putative branch site (score: 1)
aaattctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtatggctgttgatttaattctgatttagaactctgcagctccagcaagctgcatcagcatttgaggaaattctaacactgtgttagcatattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-tgtatgg
- - - - ctgttga
- - - - - - - - - - - - - - - - - tctgcag
- - - - - - - - - - - - - - - - - - - - - -ccagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacac