1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cccaagggtgatcacaaattttctcagtttttaagtctttttgattgctcattttgaggggcaaacattcctgattatgcattctctatttcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTCTCATGAAACAGCTTCTGTATTTTGACCGATATACAAGGCTGTTAGCTC
species | Vitis vinifera |
transcript | Vv13s0067g03210.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTG GTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTEST: gi|110358410|gb|EC922602.1|EC922602
genomic: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTGgtaagccttt ... tcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTT
EST: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTG GTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTEST: gi|27578715|gb|CB001410.1|CB001410
genomic: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTGgtaagccttt ... tcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTT
EST: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTG GTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTEST: gi|110400587|gb|EC967153.1|EC967153
genomic: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTGgtaagccttt ... tcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTT
EST: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTG GTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTT
genomic: CTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTTTTTCTTGATGTGgtaagccttt ... tcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTT
tgctcattttgaggggcaaacattcctgattatgcattctctatttcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTCTCATGAAACAGCTTCTGTATTTTGACCGATATACAAGGCTGTTAGCTC
tcctgat putative branch site (score: 3)
cattctctatttcttc putative PPT
tatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaagggtgatcacaaattttctcagtttttaagtctttttgattgctcattttgaggggcaaacattcctgattatgcattctctatttcttctacagGTTCGGGTTAGTGAATCCTATGGACTGAGATTTCCTCGGGAGTTTGCACTTCTCATGAAACAGCTTCTGTATTTTGACCGATATACAAGGCTGTTAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - cacaaat
- - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aggggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca