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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctttctctgattatttgtgctatgggtctcaggaatttcaaacgctaattctgcctgacatattggttgtgctctaccatttaaaatattcaaatttgaattcttttgcagACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAG

Basic information

species Vitis vinifera
transcript Vv13s0067g01470.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os05g39230.1 (Oryza sativa), 3'ss of exon 10
gttagtctttctctgattatttgtgctatgggtctcaggaatttcaaacgctaattctgcctgacatattggttgtgctctaccatttaaaatattcaaatttgaattcttttgcagACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAG
                |    |  |||||   |   |  | || | |    ||| |    |      |    |      ||  ||| | | |  |  | | ||   ||  ||| ||||||||||| ||||||||  | || || ||||| |||||||||||||| ||||||   ||  || ||||  | ||  ||
----------------tgcaattcgctatttcttctaaaacttgcca-taataacttgagcaactgaaagtttctcaaacttgcatgtcacaagtatacactttgcttgctttacagACTCCAGAGGGTTCACTCCTTGACATTATGCGTAATGCTTATGATCTCCTTTCTAGCTGCAATGTAAAGGTTCCCAAG

upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 10
gttagtctttctctgattatttgtgctatgggtctcaggaatttcaaacgctaattctgc-ctgacatattggttgtgctctaccatttaaaatattcaaatttgaattcttttgcagACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAG
        |||  | |  ||||   | |||     ||  |  | |||    |   |  |   ||  ||  || |||   |  |  || |||||| ||     ||  |||  | ||||||| || |||||  | |||||||||||| | || |||||| ||||||||||||| ||||||||||||| | | ||||||
-------gttccttaaacattta--ccatga----caaaacctacaatttatgtcttggagttggaatgatgcttgcttttaaatatctaaaatgtt-----ttacatttatatgcagACACCTGATGGCGCTCTATTAGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAG

upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G35520.1 (Glycine max), 3'ss of exon 11
gttagtctttctctgattatttgtgctatgggtctcaggaatttcaaacgctaattctgcctgacatattggttgtgctct--accatttaaaatattcaaatttgaattcttttgcagACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAG
        |||  | |  ||||          || ||  |  | |||    |   |  |  |   | |||  || |||| |  |  || |||||| || | ||||  ||      |||||| || |||||| | || || |||||| | || |||||| ||||||||||||| ||||||||||||| | | ||||||
------agttccttaaacatttacc------atcacaaaacctacaacttatgtcttggagttgta-attatttttgcttttaaatatctaaaatgtttacatttatat------gcagACACCTGATGGTGCTCTGTTGGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatattggttgtgctctaccatttaaaatattcaaatttgaattcttttgcagACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAG
 gcctgac  putative branch site (score: 3)
                                            ttcttttgc  putative PPT
                      atttaaaatattcaaa  TA-rich tract