Sequence
atgc intronic sequence ATGC exonic sequence...gtcacctttatttccaaaagctggagttatcttctacagttaggttttaaacaaaattaagttgtcacttattccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os12g03720.2 (Oryza sativa), 3'ss of exon 10
----------------gtcacctttatttccaaaagctggagttatcttctacagttaggttttaaacaaaattaagttgtcacttattccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
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gtttgcacattgtttgaattgtttaatttcatcaaattccag--aacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgt-attgttatttgttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCAAGGAATCTGGCAAAGAGTGTGACTACCCAATGAGTAGGGGGTTCTATCA
upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os11g03900.1 (Oryza sativa), 3'ss of exon 10
----------------gtcacctttatttccaaaagctggagttatcttctacagttaggttttaaacaaaattaagttgtcacttattccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
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gtttgcacattctttgaattgtttaatttcatcaaattccag--aacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgt-gttgttatttgttcgttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCAAGGAATCTGGCAAAGAGTGTGACTACCCAATGAGTAGGGGGTTCTATCA
upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G24090.1 (Arabidopsis thaliana), 3'ss of exon 9
gtcacctttatttccaaaagctggagttatcttctacagttaggttttaaacaaaattaagttgtcacttat-tccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
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gtaaaattcttaacctctaaatcaatctataatctatgtatttttttttttcgttttcgacgtgtttatggtgttttttttcttcttcttcttgggtacagTTGTTGGCTTATCATCTGACTGTTTTGAGAGGTCACAATGTTGATCAACCGAGGAATCTGGCAAAGAGTGTGACTACTCAATAG----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351013008|gb|FQ433735.1|FQ433735EST: ACAGGTTGAGGACTGTCTTCAGCCTGTAATTAATGTGGTTCCACTGCCAG T-GTTGGCATATCATCTTACTGTCC
genomic: ACAGGTTGAGGACTGTCTTCAGCCTGTAATTAATGTGGTTCCACTGC-AGgtattttgat ... ttcggtgcagTTGTTGGCATATCATCTTACTGTCC
EST:
gi|30329243|gb|CD012505.1|CD012505EST: CACAGGTTGAGGACTGTCTTCAGCCTGTAATTAATGTGGTTCCACTGCAG TTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCT
genomic: CACAGGTTGAGGACTGTCTTCAGCCTGTAATTAATGTGGTTCCACTGCAGgtattttgat ... ttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaacaaaattaagttgtcacttattccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
tattttctttc CT-rich tract
tcaatattttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcacctttatttccaaaagctggagttatcttctacagttaggttttaaacaaaattaagttgtcacttattccttgtcaatattttctttcggtgcagTTGTTGGCATATCATCTTACTGTCCTACGTGGTTACAACGTCGACCAACCTCGGAATCTTGCAAAGAGTGTGACTACCCAATGAGAAAGGTTCATTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - caaaagc
- - - - - - - - - - - - - - - cttctac
- - - - - - - - - - - - - - - - - - - - - - - - aaacaaa