Sequence
atgc intronic sequence ATGC exonic sequence...cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaagaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaa----gaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC----
|| | || || || ||| | || | || ||| | | | ||||| | || || | ||| ||| | ||||| ||| ||| |||||||| || || |||||||| |||||||||||||| |||||||| || |||||||| |||| ||| | | ||| | ||| |||| |||||
--------tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G32260.1 (Glycine max), 3'ss of exon 9
cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaagaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC----
|| | ||| | | |||||| | | ||| | ||| | ||||| ||| ||||| ||||||||| ||| ||||| || || || || ||||| |||||||||||||| |||||||| || |||||||| |||| ||| | | ||| | ||| |||| |||||
---tctttgaacaggttttttatgtcatgtcatttctcttgcatttctaaagtactcttacactgtgagcaaagaa-agatgttttttacttaattagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACCATCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 3'ss of exon 8
cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaagaagaagaacagaa-------aatttttccttaattaga----------gCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC
|||| | || ||| || | | || || | | || |||| | ||| | || || | | | | ||| |||||| || ||||| |||||||||||||||||||| || |||||||| || |||| || || || || ||| |
----------gtaagtggaccaaatatgttttctttccactacgtattggttcttgcatgttggttggaagtaaaaccgttttgttttaaccgtttcacagGTGGTCAATCCATTTACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTACG---------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttttttactttttttaaagaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC
ccttaat putative branch site (score: 4)
tttttcctt CT-rich tract
tttttactttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaagaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC
- - -gaagagta
- - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat