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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatggctatttccattcacgtgttcatttaacatgcatacagtttgattgttacaagcaagtgttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAA

Basic information

species Vitis vinifera
transcript Vv13s0019g04370.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 9
gtgatggctatttccattcacgtgttcatttaacatgcatacagttt----gattgttaca-agcaagtgttttgttc---agATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAA
|| | || | ||   | | |   |||      |  |   ||| ||||      || |||   | |||    |||| ||   ||||||||||||||||||| |||||| ||||| || || ||||||||| | ||||| |||||| | || |||||||||||| ||
gtaa-ggatcttattactaatcagtttcacagaggttactactgtttctaaatttattaagcatcaatcactttgatctgtagATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAA

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G35490.2 (Glycine max), 3'ss of exon 9
gtgatggctatttccattcacgtgttcatttaacatgcatacagttt----gattgttaca-agcaagtgttttgttc---agATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAA
|| | || | ||   | | |   |||    | |  ||  ||| ||||      || |||   | |||    |||  ||   ||||||||||||||||||| |||||| ||||| || || ||||||||| | ||||| |||||| | || |||||||||||| ||
gtaa-ggatcttattactaatcagtttcactgaggtgactactgtttttaaatttattaagcatcaatcactttcatctgtagATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862630|gb|DT011685.1|DT011685
EST:     CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAG                         ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
genomic: CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGgtgatggcta ... ttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
EST: gi|30128717|gb|CB914056.1|CB914056
EST:     CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAG                         ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
genomic: CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGgtgatggcta ... ttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
EST: gi|71862924|gb|DT011979.1|DT011979
EST:     CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAG                         ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
genomic: CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGgtgatggcta ... ttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
EST: gi|30137604|gb|CB922942.1|CB922942
EST:     CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAG                         ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
genomic: CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGgtgatggcta ... ttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
EST: gi|30128985|gb|CB914324.1|CB914324
EST:     CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAG                         ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT
genomic: CTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGgtgatggcta ... ttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgttcatttaacatgcatacagtttgattgttacaagcaagtgttttgttcagATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAA
                                             ttttgttc  CT-rich tract
       atttaacat  TA-rich tract