Sequence
atgc intronic sequence ATGC exonic sequence...ttatagattgtgaaagctacattttttaatgggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 3'ss of exon 11
ttatagattgtgaaagctacattttttaatgggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
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ttattattttacttgcttatttgaatttgcttgagatacacaaccatatgacttgtcctttaactttagctctgttggtaacaatctcttttacttgtagATTGGTGCTATAATATCTGGTATTCAACCTGGGTTGACAATGGTTGTTGGTCCTCCTGGTACGGGAAAAACAGATACAGCTGTGCAGATATTGAATGTTT
upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G410479_T01 (Zea mays), 3'ss of exon 12
------ttatagattgtgaaagctacattttttaatgggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
| ||| || | |||| | ||| | | | | ||| || |||| || | || ||||| | ||| | | | || |||| || || || | || |||||||| || || || || |||||||| ||||| |||||||| ||||| || || |||||||||||||| || |||||||
gaataagtctagtatg-gtctgctagtgtctttgctttcatgatgagtgtggatc-ttattcaccttaaaattctgactgtga----caatattatttatttgtagATCGGTGCTATAATATCTGGTATTCAACCTGGGTTGACGATGGTTGTTGGTCCTCCTGGTACGGGAAAAACAGATACTGCTGTGCAGATATTAAATGTTC
upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G00260.1 (Glycine max), 3'ss of exon 10
-----ttatagattgtgaaagctacattttttaatgggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
|| | | | | || || | | || | | | || ||||| | | || | | | | ||||| | | |||| ||| |||||||| || || |||||||| || |||| ||||||||||| ||||||||||||||||||||||| || ||||| || || | |||||||
tccccacatgtacttt-atgtctttatcctcttattt-atattccctatctatgagtattggataaatattaataatagtgtga---aatgttcttatcaagcagGTTGAAGCAATCATCTCTGGCATTCAGCCTGGTCTAACTATGGTTGTGGGGCCACCTGGTACAGGAAAGACTGATACAGCTGTACAAATTCTAAATGTTC
upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA0048S00340.1 (Glycine max), 3'ss of exon 10
-ttatagattgtgaaagctacattttttaatgggagggaaaatgttca--ttgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
||| || | | || |||| | || | || |||| | | || | | | | ||||| || | |||| ||| |||||||| || || |||||||| || |||| ||||||||||| ||||||||||||||||||||||| || ||||| || || | |||||||
cccatatatacttccccacatgttctttatcctcttattatattccccatctgatatttgattaatattaataatagtgtga---aatgttcctatcaagcagGTTGAAGCAATCATCTCTGGCATTCAGCCTGGTCTAACTATGGTTGTGGGGCCACCTGGTACAGGAAAGACTGATACAGCTGTACAAATTCTAAATGTTC
upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G38770.1 (Arabidopsis thaliana), 3'ss of exon 10
ttatagattgtgaaag----ctacattttttaatg-ggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
|| || |||| | | | ||| | ||| ||||| | || | ||| | | || || | | | | | ||||| |||||||||| | || ||||||||||| || |||| ||||| || |||||||| ||||| ||||||||||| || || ||||| || ||||||||||
-----gaatgagaaaatataccaaaacatttggtatggattcaaaatatggatcattgttgcaagttgtaactaaaccatgtccatgcctactattttcctgcagGTTGGAGCAATTATCTCTGGTATTCAGCCTGGGCTAACTATGGTGGTTGGTCCACCAGGTACCGGAAAGACTGATACAGCAGTGCAAATTTTGAATGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
tctctgct CT-rich tract
tttttgactattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatagattgtgaaagctacattttttaatgggagggaaaatgttcattgctattgactctgtctttttgactatttaccttaatgtctctgctatgcagATTGGAGCAATCAGTTCAGGTATTCAGCCAGGCTTAACAATGGTTGTGGGTCCACCTGGTACAGGAAAGACTGACACTGCTGTGCAGATCTTGAATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - -cattgct