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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaagagttcatttatttgcattggagagttccatacaattttctcaactactcatcttggtgttagaaatattccttatacactatttttatttttactttccaaattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130365|gb|CB915704.1|CB915704
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110699424|gb|EE076409.1|EE076409
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|27582078|gb|CB004773.1|CB004773
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|77577354|gb|DV217389.1|DV217389
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|71882833|gb|DT031888.1|DT031888
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|30303799|gb|CB980593.1|CB980593
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTTTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110715292|gb|EE093173.1|EE093173
EST:     CGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: CGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     TTCAAGCTCCTGGAA-ACAAACTCNGAGTTTTTGGTACGTGTCTGACATG                         GTTGATGGGACT-GTTCGA
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGG-ACTTGTTCGA
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110361965|gb|EC925471.1|EC925471
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|32245507|gb|CD711326.1|CD711326
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|27583335|gb|CB006030.1|CB006030
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|71873572|gb|DT022627.1|DT022627
EST:     TTC-AGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110694959|gb|EE072432.1|EE072432
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|30303733|gb|CB980527.1|CB980527
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110723312|gb|EE100478.1|EE100478
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     CAAGCTCCTGGAAC-CAAACTCGGGAGTTTTTGTTACGTGTCTGACCATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACNACACAGGCCCCATCAA
genomic: CAAGCTCCTGGAACACAAACTCGG-AGTTTTTGTTACGTGTCTGAC-ATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAA
EST: gi|110721136|gb|EE097790.1|EE097790
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110719051|gb|EE096588.1|EE096588
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGTCCTNATCA-
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCC-ATCAA
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|83275690|gb|DV939698.1|DV939698
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110732601|gb|EE108029.1|EE108029
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATG
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATG
EST: gi|33408479|gb|CF214106.1|CF214106
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|71862913|gb|DT011968.1|DT011968
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCA
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCA
EST: gi|32246001|gb|CD711820.1|CD711820
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|33410414|gb|CF216041.1|CF216041
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110696154|gb|EE074987.1|EE074987
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|110360290|gb|EC923209.1|EC923209
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
EST: gi|71884738|gb|DT033793.1|DT033793
EST:     TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG                         GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC
genomic: TTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATGgtatgcaaga ... aattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttagaaatattccttatacactatttttatttttactttccaaattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG
                ttatacactattttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcaagagttcatttatttgcattggagagttccatacaattttctcaactactcatcttggtgttagaaatattccttatacactatttttatttttactttccaaattttaaagGTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA