Sequence
atgc intronic sequence ATGC exonic sequence...tctcaacttagtcaaactggttttttggtctcatatacttggtacatgctttatgtccttccctctgtgagtctcattttggatgtacaaccattttcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 7
tctcaacttagtcaaactggttttttggtctcatatacttggtacatgctttatgtccttccctctgtga-----gtctcattttgg-atgtacaa-ccattttcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
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-----atacagcca--ttcattcactactttgttataaattgttaatgttctatgtcattaattatgatataactgtctaatttagttacttccaatctgcctatagGTTCTGAAGGCACTCGTAAAAAGCAGTAGGGAGAACTCCTGGGCAGAGTTAGTTCATTGTAAGCTTATTTCCATGTTAACCAACATGTTTTATGAAGTTG
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G10370.1 (Glycine max), 3'ss of exon 10
tctcaacttagtcaaactggttttttggtctcatatacttggtacatgctttatgtccttccctctgtga-----gtctcattttgg-atgtacaa-ccattttcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
|| ||| || | || | | | |||| | || ||| | |||||| || | || | |||| |||| | | | ||| | ||||| | |||| ||| | | | || ||| ||| || ||||||||| ||||||| | ||||||||||| ||||||| | |||||||||||| |||||
-----acatagcca--ttcattcactactttgttataaattgttaatgttctatgtcattaattatgatataactgtctaatttagttacttccaatctgcccatagGTTCTGAAGGCACTTGTAAGAATCAGTAGGGAGAACTCCTGGGCAGAATTAGTTCACTGTAAGCTTATTTCCATGTTAACCAACATGTTTTATGAAGTTG
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G12590.1 (Arabidopsis thaliana), 3'ss of exon 10
-tctcaacttagtcaaactggttttttggtctcatatacttggtacatgctttatgtccttccctctgtgagtctcattttggatgtacaaccattt--tcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
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ttttagaccttcgtaactatgatttctgtttccagctgcatgttaccatttctcagccaagttgtacttg---ctgatgagccagttactttccttgaatcagGTTATAAAAGCTCTTCTGGGAACTAGCAAAAGGAATTCTTGGTCAGAAGTTGTTCATTCCAAGCTTATTTGTATCATGACGAATATGTTTTATCAATCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgctttatgtccttccctctgtgagtctcattttggatgtacaaccattttcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
ccattttc CT-rich tract
tcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctcaacttagtcaaactggttttttggtctcatatacttggtacatgctttatgtccttccctctgtgagtctcattttggatgtacaaccattttcagGTTATTCAGGCGCTTTTGAAGGTTAGCAGGAGGAATTCATGGGCAGAAGTAGTTCATTCTAAGCTTATTTGCATGTTATCAAACATGTTTTATCAAGTTC
tctcaac
- - - - - -tcaaact
- - - - - - - - - - - - - - - - - -tacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt