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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG

Basic information

species Vitis vinifera
transcript Vv12s0121g00080.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| | || ||||||||||||| ||||||||| | | ||| ||| | ||| | |||||||||
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG
|||  ||    |     |   || | || |   | ||   | ||| ||   |||   | ||  | |||     ||  | |||||||||||||||||||||||||||   || ||||||| ||||| ||||||||| | | ||||||||| ||| | |||||| ||
gtatgtaacaattgttctattagcaatgatgattatt---gatttcat--ctttatggattgttaagcac---ttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG
|||| ||    |     ||  |  |          ||     ||| ||   |||  |||||  | | |   | |   |   | |||||||||||||||||||||||   || ||||||||||||| || |||||| | | ||| ||||| ||| | |||||| ||
gtaagtaacaattgttcttctattagcaacggtgattatgaatttcat--ctttcttgtttgttaacc--tcttcaaaaaatttccagCTTCAAATGGAAATCCTCAGCATTCAGATTCTTTGCATTATATTGATGCATATGGTCGGTTAAATTCATACCAAAAG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG
|| | |   ||||   | | |   ||   |||||| |    |  ||| ||   ||     | | ||  |   || |   |||   |||||||||||||  |||| |||| ||||  ||||||||||||||||||||| || ||| | || ||  | || ||||||
gtgattcaccttc--ttctacttcatatatatcttatctt-tacttagaaaccttgatcattaagattgatggtctgtcttt---cagCTTCAAATGGCGATCCCCGAACTCCAAGTTCTTTGCACTACATTGATCCATCAGGCAGATTAAACTCATATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG
                                        ttttatttt  CT-rich tract
        tttttataatttttct  TA-rich tract