Sequence
atgc intronic sequence ATGC exonic sequencegtaatatatatttaacattattagattatgtattattgcataaatagacgtgcatattatacaatgaaaaataaaattctaaaccaaatagcatttccttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 9
--------------------------------gtaatatatatttaacattatta-gattatgtattattgca-taaatagacg--tgcatattatacaatgaaaaa-----taaaattctaaaccaaatagcatttccttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
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gtaattccaaatttgcactgttactgataactgatgctcttgttcaacatagtttcaagcatggatgtttgaagtagatttatggctgcatgtaaagcttggttttccttttttggagcctaaatgaaaaggttactgtcaacagACTGCAGCAAGAAAAAGGTGCAGAAAACACATGATGGAGACTGATGAATTTGTGTCAAGCACCTCTGAAGGTTACCTAATGGATACCATTACCATCTCAA
upper sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G00660.1 (Glycine max), 3'ss of exon 10
gtaatatatatttaacattatta--gattat--gtattattgcataa-ataga------cgtgcatattatacaatgaaa--aataaaattctaaaccaaatagcatttccttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
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gtaattccaaatttgcacggttactgataactaatgctcttgttcaacatagtgtcaaccatggatgtt-tgaagtgtatttatttggagtctaaatgataaggctactgtcaacagACTGCAGCAAGAAAAAGGTGTAGAAAACACATGATGGAGACTGATGAATTTGTGTCAAGCACCTCTGAAGGTTACCTAATGGATACCATTACCATCTCAA
upper sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G48310.2 (Arabidopsis thaliana), 3'ss of exon 12
---------------------------------------------------------------------------------gtaatatatatttaacattattagattatgtatt---attgcataaatagacgtgcatattata-caatgaaaaataaaattctaa-accaaatagcatttcc-ttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
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gtaaaatatttcaagttttcaacaaccttcatatgttctcctatcattaagaaagtctaccactaagagacctttaaacctgttcttttcaaatagtatacacatttcatacctttaagttgtcttgattttgtaacatatcaaggctatgatgttcacgattttcttgtcatatggaaaacctactgcagACAGCAGCAAAGAAGAGGTGTCGGAAGCACATGGTTGATACCGATGAGTATGTTTCCTGCAACTCTGAAGGTTTTCTTTTGGACTCCGTCACAATTTCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgcatattatacaatgaaaaataaaattctaaaccaaatagcatttccttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
ttctaaa putative branch site (score: 2)
catttcctt putative PPT
tattatacaatgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatatatatttaacattattagattatgtattattgcataaatagacgtgcatattatacaatgaaaaataaaattctaaaccaaatagcatttccttacagACAGCAGCAAAAAAGAGGTGCCGGAAACACATGTTGGACACTGATGAGTTTTTGTCAAGCAATTCTGATGGTTTTCTTATGGACCCCATTACCATCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA