1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...actcgcagggtttaaagttatttacttctgcgtaaatggattaccatgttggtttgttctgtcctgtaagcttgtttcactgaaatttgtttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAAAGAGCTACATCTTCCTGCATTTACCACAG
species | Vitis vinifera |
transcript | Vv12s0055g00900.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATACCTTGCAGTACTTTCAACAATGATGGATCAATATTTGCATATTCG GTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAEST: gi|110386126|gb|EC950701.1|EC950701
genomic: CTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCGgtatgttcca ... ttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCA
EST: CTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCG GTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAEST: gi|30329697|gb|CD012959.1|CD012959
genomic: CTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCGgtatgttcca ... ttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCA
EST: CTATACCTTGCAGTACTTTCAACAATGATGGATCAATATTTGCATATTCG GTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCA
genomic: CTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCGgtatgttcca ... ttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCA
atgttggtttgttctgtcctgtaagcttgtttcactgaaatttgtttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAAAGAGCTACATCTTCCTGCATTTACCACAG
tttgttt CT-rich tract
aaatttgtttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcgcagggtttaaagttatttacttctgcgtaaatggattaccatgttggtttgttctgtcctgtaagcttgtttcactgaaatttgtttgtttatagGTGTGTTATGACTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAAAGAGCTACATCTTCCTGCATTTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - cttctgc
- - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - -ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa