Sequence
atgc intronic sequence ATGC exonic sequence...agaatgttaatttactttttctgaaatttatttactcactgcagttctaagcatatgtcagttggtttaatgctactcatcttgactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 12
agaatgttaatttactttttctgaaatttatttactca-ctgcagttctaagcatatgtcagttggtttaatgctactcatctt--gactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
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--aatggggttcctgctctaatgtgtttccttggatcagttttgatggttactgttactaactaggttttgtcttgttttccatcaaactcaaacat-aacagGGAAATCATTTGGATTTACGGCTTGTTCGGAACCAATGGCTCTTAATAGACCCCAAGATACAGTTTCTAATGTCACAGGCAAATGAAGATAAAACATCTG
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 13
agaatgttaatttactttttctgaaatttatttactcactgcagttctaagcatatgtcagttggtttaatgctactcatcttgactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
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----------------gtttgtgaaattccttgtttaatgtttgtgcttgttttgactggatcgtctgactaagacaccctttgctactcaaacaaacagGGACATCATTTAGATTTACGGCTTATTAGGAACCAGTGGCTTTTAATAGACCCCAAAATACAGGTTCTTATGTCAGAGACAAATGAAGACAAAACATCTG
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 14
agaatgttaatt--tactttttctgaaatttatttactcactgcagttctaagcatatgtcagttggtttaatgctactcatcttgactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
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--tttactagttacagaagtttatgaaattccttgtttaatgtttgtgcttgttttgactggatcctttgactaagacaccctttgctactcaaacaaacagGGACATCATTTAGATTTACGGCTTATTAGGAACCAGTGGCTTTTAATAGACCCCAAAATACAGGTTCTTATGTCAGAGACAAACGAAGATAAAACATCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaagcatatgtcagttggtttaatgctactcatcttgactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
tcttgac putative branch site (score: 3)
tttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaatgttaatttactttttctgaaatttatttactcactgcagttctaagcatatgtcagttggtttaatgctactcatcttgactcaaacatgaatagGGACATCATCTGGACTTACGGCTTGTTCGGAATCAATGGCTATTGATAGATCCCAAGGCAGAGTTTCTTATGTCAGAGGAAAATGAAGACAAAACATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgg