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...atgtacatatataaaatatttacttctttatttaaaataataagaggaagcttatggggcttgatctgtaacataatgcacatatttttttccatttcagGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCCAATTCTAATTATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATA
species | Vitis vinifera |
transcript | Vv12s0028g03470.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGATGATGTACCAGAAGCTCTTGAGAGGTGGCATGCTTCAGGCATCAAG GTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCCEST: gi|30131293|gb|CB916632.1|CB916632
genomic: TTGATGATGTACCAGAAGCTCTTGAGAGGTGGCATGCTTCAGGCATCAAGgtcttgtacc ... tccatttcagGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCC
EST: TTGATGATGTACCAGAAGCTCTTGAGAGGTGGCATGCTTCAGGCATCAAG GTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCC
genomic: TTGATGATGTACCAGAAGCTCTTGAGAGGTGGCATGCTTCAGGCATCAAGgtcttgtacc ... tccatttcagGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCC
ggaagcttatggggcttgatctgtaacataatgcacatatttttttccatttcagGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCCAATTCTAATTATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATA
ctgtaac putative branch site (score: 3)
tatttttttccatttc putative PPT
atatttttttccattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtacatatataaaatatttacttctttatttaaaataataagaggaagcttatggggcttgatctgtaacataatgcacatatttttttccatttcagGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCCAATTCTAATTATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATA
- - - - - ataaaat
- - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - -aagagga
- - - - - - - - - - - - - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa