1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaatttttatggcttagctgattaatcttttacttttgagagagaatgttgaattccaagttgaagctggtttccttgattttgattgtttacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCCTAAAGCAGGGATGGCATGCTTCATTTGTAATGGTGGAACTCATCTCTG
species | Vitis vinifera |
transcript | Vv11s0052g01840.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAG AAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCEST: gi|30303616|gb|CB980410.1|CB980410
genomic: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaa ... tacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
EST: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAG AAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCEST: gi|30304336|gb|CB981130.1|CB981130
genomic: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaa ... tacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
EST: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAG AAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCEST: gi|26266030|gb|CA817093.1|CA817093
genomic: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaa ... tacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
EST: GGGGTAATCTGAAGCCAGACTATTTGGAAAAG AAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCEST: gi|83276057|gb|DV940065.1|DV940065
genomic: GGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaa ... tacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
EST: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAG AAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
genomic: GAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAGgtatgtttaa ... tacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGC
atgttgaattccaagttgaagctggtttccttgattttgattgtttacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCCTAAAGCAGGGATGGCATGCTTCATTTGTAATGGTGGAACTCATCTCTG
ttttgat putative branch site (score: 4)
tttacttttc putative PPT
attttgattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttttatggcttagctgattaatcttttacttttgagagagaatgttgaattccaagttgaagctggtttccttgattttgattgtttacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCCTAAAGCAGGGATGGCATGCTTCATTTGTAATGGTGGAACTCATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -tatggct
- - - - - - - - - - - - - - - - - - - - -gagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct