Sequence
atgc intronic sequence ATGC exonic sequence...tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtttatgtggtaacaggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 10
tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtt-----tatgtggtaacaggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
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-gtacttccctctat--atgaagacctttattctgcgatgcccctccctctaaagcaggttccttgtccttgattatgagatttgtgagtgt-actga-ttacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTCTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G07040.1 (Glycine max), 3'ss of exon 10
-tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtttatgtggtaac--aggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
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gtacttccctctatatgaa-gacctttattctgcgatgcccctcccgctaaagcaggttccttgacctagattatgagattcgcgagtgt-actga-ttacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTTTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G57410.3 (Arabidopsis thaliana), 3'ss of exon 10
-tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtttatgtggtaacaggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG------
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gtacgctctatttccatactaa----gcttaacgtaagcaact--taacatggtttat-tcataagaaa----agtttttatc--tttggttttgttgcagACAGATATGCGTGATTTCTTAAATGCTCCAAATGGGTCAGCTA------CATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTGGGTGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctttgtttatgtggtaacaggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
tgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtttatgtggtaacaggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - -aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtatga