Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaattttcaaaatgaatgtatgattcctgttttagtatatcatgttaaaggcttatttttccatgaaaaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGATACATATCAAAGGATATGGTTGTGAAAGGCTTGCCAGCTCCCAGTGATG

Basic information

species Vitis vinifera
transcript Vv11s0016g04970.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884179|gb|DT033234.1|DT033234
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|110387459|gb|EC952124.1|EC952124
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|110689922|gb|EE066580.1|EE066580
EST:     TGCTCAAAAAGAA-CTTGACATGCTTGCAGCTACC-ACCCAAATTTTAAA                         A-ATTCTACACTGTAGATAATCCATCAA-TAATTGGAGAGGAG-TACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|33401973|gb|CF207600.1|CF207600
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAG                         ATATTTTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|71883292|gb|DT032347.1|DT032347
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|71886807|gb|DT035862.1|DT035862
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|33402844|gb|CF208471.1|CF208471
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACCGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|33402755|gb|CF208382.1|CF208382
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACCGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
EST: gi|110707462|gb|EE083887.1|EE083887
EST:     TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTTAAG                         ATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA
genomic: TGCTCAAAAAGAAGCTTGACATGCTTGCAGCTACCCACCCAAATTTGAAGgtaccaaatt ... aaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcctgttttagtatatcatgttaaaggcttatttttccatgaaaaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGATACATATCAAAGGATATGGTTGTGAAAGGCTTGCCAGCTCCCAGTGATG
       ttttagtatatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccaaattttcaaaatgaatgtatgattcctgttttagtatatcatgttaaaggcttatttttccatgaaaaaatcccagATATTCTACACTGTAGATAATCCATCAAATAATTGGAGAGGAGGTACTGGATACATATCAAAGGATATGGTTGTGAAAGGCTTGCCAGCTCCCAGTGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC