1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgctcatatttgatctttaagctaaacatgttcttgagcaattcagctgttgatcatgaaatcttgttctaatgctttttacatgttcctggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTATGGGCTTGCTGCATTCTTCCAGTGCTGGTACTCAATCAACATGGACAC
species | Vitis vinifera |
transcript | Vv11s0016g04210.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACA TTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTEST: gi|110696912|gb|EE073450.1|EE073450
genomic: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACAgtaagtgaat ... ggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCT
EST: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACA TTTCTTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTEST: gi|27584152|gb|CB006847.1|CB006847
genomic: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACAgtaagtgaat ... ggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCT
EST: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACA TTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCT
genomic: CAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACAgtaagtgaat ... ggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCT
gctgttgatcatgaaatcttgttctaatgctttttacatgttcctggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTATGGGCTTGCTGCATTCTTCCAGTGCTGGTACTCAATCAACATGGACAC
ttctaat putative branch site (score: 2)
tttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctcatatttgatctttaagctaaacatgttcttgagcaattcagctgttgatcatgaaatcttgttctaatgctttttacatgttcctggtgatatagTTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTATGGGCTTGCTGCATTCTTCCAGTGCTGGTACTCAATCAACATGGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-gctcata
- - - - - - - - - aagctaaa
- - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - -ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - -gatcatg