1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagggttcatatctgaagaaatggttgtttccttagcatatatatgtgtatgtgatagttagaatttatagccacacaatgaacagcagcatgaacaacatttaatattattcaacttttaaacttcattacatttttacttggacagACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGAACAGAGAAGAAGAAATTCTCAGGTTTTGGGGCTACAGTAAGCTTTTCAA
species | Vitis vinifera |
transcript | Vv11s0016g03750.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAATGATTTTCCTCATAATGAGCAGGAGAATAAGGTTCCTGGTGTCTTG ACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGA
genomic: CCAATGATTTTCCTCATAATGAGCAGGAGAATAAGGTTCCTGGTGTCTTGgtaagggttc ... acttggacagACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGA
aacaacatttaatattattcaacttttaaacttcattacatttttacttggacagACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGAACAGAGAAGAAGAAATTCTCAGGTTTTGGGGCTACAGTAAGCTTTTCAA
atttaat putative branch site (score: 4)
tttttactt putative PPT
atttaatattattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggttcatatctgaagaaatggttgtttccttagcatatatatgtgtatgtgatagttagaatttatagccacacaatgaacagcagcatgaacaacatttaatattattcaacttttaaacttcattacatttttacttggacagACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGAACAGAGAAGAAGAAATTCTCAGGTTTTGGGGCTACAGTAAGCTTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA