1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtatcttgagcaagggcacaatcattagatgtagtctaaccagtaaaagcaagtcttattttggttttagtggcaaaactaaatgaaacgcattaaatccccacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTATTCCCCTGTTCAAGTCTATCGAGAAGTTCAAAAGAGCAGCAACCAAGA
species | Vitis vinifera |
transcript | Vv11s0016g03010.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAG AAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTEST: gi|352777766|gb|FQ466819.1|FQ466819
genomic: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAGgtatgtatct ... cacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTT
EST: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAG AAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTEST: gi|352769776|gb|FQ468704.1|FQ468704
genomic: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAGgtatgtatct ... cacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTT
EST: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAG AAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTEST: gi|352772505|gb|FQ471980.1|FQ471980
genomic: ATGAGGAGTTTTTGCCTTTTGATTATCTCTCCTATGCATATGAGCTCCAGgtatgtatct ... cacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTT
EST: TGAGCTCCCAG AAAAGCGCAAAAGAGTTGGAAGGAGTGATTTCAAATAAGGGCATAAACTT
genomic: TGAGCT-CCAGgtatgtatct ... cacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCT
tattttggttttagtggcaaaactaaatgaaacgcattaaatccccacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTATTCCCCTGTTCAAGTCTATCGAGAAGTTCAAAAGAGCAGCAACCAAGA
aactaaa putative branch site (score: 2)
tccccac putative PPT
aaaactaaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatcttgagcaagggcacaatcattagatgtagtctaaccagtaaaagcaagtcttattttggttttagtggcaaaactaaatgaaacgcattaaatccccacatgacagAAAAGCGCAAAAGAGTTGGAAGGAGAGATCTCAAATAAGGGCATAAACCTTATTCCCCTGTTCAAGTCTATCGAGAAGTTCAAAAGAGCAGCAACCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG