1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attggagcaagttgataagtgaaatttttatgctacaatcacaagacttgaaactcatgggatttagataaattcatcagtttaatttctttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
species | Vitis vinifera |
transcript | Vv11s0016g02850.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|161717475|gb|FC066878.1|FC066878
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCCAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTTCTCA-CA-GTAAAAGGATGGGCATAACTEST: gi|30329681|gb|CD012943.1|CD012943
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTT-CTCAACAAGTAAAAGGATGGGCATAACT
EST: AAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCANCAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|29784840|gb|CB341314.2|CB341314
genomic: AAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|33409346|gb|CF214973.1|CF214973
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|30256405|gb|CB972248.1|CB972248
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|33409425|gb|CF215052.1|CF215052
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: AAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|110363721|gb|EC927331.1|EC927331
genomic: AAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|71884224|gb|DT033279.1|DT033279
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|110361259|gb|EC924720.1|EC924720
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|71882578|gb|DT031633.1|DT031633
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|30256378|gb|CB972221.1|CB972221
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|30256486|gb|CB972329.1|CB972329
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|110361880|gb|EC925383.1|EC925383
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|110729768|gb|EE106084.1|EE106084
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGEST: gi|351045413|gb|FQ447678.1|FQ447678
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
EST: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGG GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
genomic: GAAACAAGCTTCTCCAAGATGTTGGGCTGTGGATATCGCAGAAAATCAGGgtagggattc ... ttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
acttgaaactcatgggatttagataaattcatcagtttaatttctttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
gtttaat putative branch site (score: 4)
tttctttgttt CT-rich tract
atttagataaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggagcaagttgataagtgaaatttttatgctacaatcacaagacttgaaactcatgggatttagataaattcatcagtttaatttctttgtttgcagGATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- tggagca
- - - - - - - - aagtgaaa
- - - - - - - - - - - - - - -atgctac
- - - - - - - - - - - - - - - - - - - tcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaa