Sequence
atgc intronic sequence ATGC exonic sequence...aatttcaacaagtttgggatagtttattatttcaagttctggggatgttattaagccatatgatatgttaaattaatggctgatggataaaaacttttagGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G039683_T02 (Zea mays), 3'ss of exon 10
aatttcaacaagtttgggatagtttattatttcaagttctgg--ggatgttattaagccatatgatatgttaaattaatggctgatggataaaaactttt-agGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
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-tttgtggatactgctccacaggatggtacataatactcctgttgcattttatcctgtt-tctgaagaagtgcttgttcatattgtccttattatcttttcaGGGTATTGATAGACAAGATGTCCGTATTGTTTGCCACTTCAACTTGCCTAAGTCAATGGAATCCTTCTACCAGGAGTCAGGTCGAGCTGGTCGTGATCAA-
upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G039683_T01 (Zea mays), 3'ss of exon 10
aatttcaacaagtttgggatagtttattatttcaagttctgg--ggatgttattaagccatatgatatgttaaattaatggctgatggataaaaactttt-agGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
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--ttgtggatactgctccacaggatggtacataatactcctgttgcattttatcctgtt-tctgaagaagtgcttgttcatattgtccttattatcttttcagGGTATTGATAGACAAGATGTCCGTATTGTTTGCCACTTCAACTTGCCTAAGTCAATGGAATCCTTCTACCAGGAGTCAGGTCGAGCTGGTCGTGATCAAC
upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G08180.1 (Glycine max), 3'ss of exon 11
-----------------aatttcaacaagtttggg-atagtttat----tatttcaagttctggggatgttattaagccatatgatatgttaaattaatggctgatggataaaaacttttagGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
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gtacgtactacatggtgattttgtattagcttgactaaaatttctgtgatgttttaacatttgtaatcttcattatact-cgtgaattgctgg--taataacttg-agaccaaattaaccagGGCATTGATAGAAAGGATGTCAGAATTGTATGCCACTTCAACATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAAT
upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G35740.1 (Arabidopsis thaliana), 3'ss of exon 11
aatttcaacaagtttgggatagtttattatttcaagttctggggatgttattaagccatatgatatgttaaattaatggctgatggataaaaacttt-tagGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
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------------gtaaacaaagattctt-tctcatgttgcatctgtttaattgtgt-acttcttatgtactgtagcatgatga-gactactgactttctagGGCATAGATAAGAAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAAGAGTCTGGTAGAGCAGGTCGGGATCAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttattaagccatatgatatgttaaattaatggctgatggataaaaacttttagGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
ctttt CT-rich tract
atatgatatgttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttcaacaagtttgggatagtttattatttcaagttctggggatgttattaagccatatgatatgttaaattaatggctgatggataaaaacttttagGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tcaacaa
- - - - - - - - - - - - - - - - - - - - ggggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga